Factsheet for Zm00001d025713_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003258_P001	Maize	plastid	97.2	97.37
TraesCS2D01G341600.1	Wheat	cytosol	95.8	96.13
Os04t0484900-01	Rice	cytosol	96.32	95.99
TraesCS2B01G361800.1	Wheat	cytosol	95.62	95.96
TraesCS2A01G320900.1	Wheat	cytosol	95.62	95.96
GSMUA_Achr3P02630_001	Banana	cytosol	79.51	91.16
HORVU4Hr1G039630.1	Barley	cytosol	10.51	90.91
VIT_17s0000g10190.t01	Wine grape	cytosol	89.49	90.76
Solyc03g110910.2.1	Tomato	cytosol, nucleus	89.67	90.62
PGSC0003DMT400039303	Potato	cytosol	89.14	90.25
KRH63718	Soybean	cytosol, nucleus	88.44	89.54
HORVU2Hr1G083870.1	Barley	plasma membrane	95.8	89.23
KRH54237	Soybean	cytosol, nucleus	87.57	88.65
AT5G50320.1	Thale cress	cytosol	87.57	88.5
CDY34039	Canola	cytosol	87.22	88.14
Bra000619.1-P	Field mustard	cytosol	87.22	88.14
CDX83163	Canola	cytosol	87.04	87.96

Protein Annotations

EntrezGene:100383540	MapMan:15.3.6.2.3	Gene3D:3.40.630.30	Gene3D:3.80.30.20	ProteinID:AQK44350.1	InterPro:Acyl_CoA_acyltransferase
EMBL:BT067512	UniProt:C0PGU3	InterPro:ELP3-like	InterPro:Elp3/MiaB/NifB	InterPro:GNAT_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0016746	GO:GO:0019538	GO:GO:0046872
GO:GO:0051536	InterPro:IPR000182	InterPro:IPR023404	PFAM:PF00583	PFAM:PF04055	PFAM:PF16199
PIRSF:PIRSF005669	PFscan:PS51186	PANTHER:PTHR11135	PANTHER:PTHR11135:SF0	InterPro:Radical_SAM_C	SMART:SM00729
SUPFAM:SSF102114	SUPFAM:SSF55729	TIGRFAMs:TIGR01211	UniParc:UPI000195CADC	EnsemblPlantsGene:Zm00001d025713	EnsemblPlants:Zm00001d025713_P001
EnsemblPlants:Zm00001d025713_T001	InterPro:rSAM	InterPro:rSAM_horseshoe	SEG:seg	:	:

Description

GNAT-transcription factor 42Elongator complex protein 3

Coordinates

chr10:-:127154778..127159945

Molecular Weight (calculated)

63734.1 Da

IEP (calculated)

8.800

GRAVY (calculated)

-0.277

Length

571 amino acids

Sequence
(BLAST)

001: MATAAAAAVA APEQPRRRKP APGRGGVALP AGLSEEEARV RAIAEIVSAM GELSRRGEDV DLNSLKSAAC RRYGLARAPK LVEMIAAVPE ADRATLLPRL
101: RAKPVRTASG IAVVAVMSKP HRCPHIATTG NICVYCPGGP DSDFEYSTQS YTGYEPTSMR AIRARYNPYV QARSRIDQLK RLGHSVDKVE FILMGGTFMS
201: LPAEYRDYFI RNLHDALSGH TSANVEEAIC YSEHSAVKCI GMTIETRPDY CLGPHLRQML SYGCTRLEIG VQSTYEDVAR DTNRGHTVAA VADCFCLAKD
301: AGFKVVAHMM PDLPNVGVER DLESFREFFG SPAFRADGLK IYPTLVIRGT GLYELWKTGR YRNYPPELLV DIVARILSLV PPWTRVYRVQ RDIPMPLVTS
401: GVEKGNLREL ALARMEDLGL KCRDVRTREA GIQDIHHKIR PDEVELVRRD YAANEGWETF LSYEDTRQDI LIGLLRLRKC GRNVTCPELV GRCSIVRELH
501: VYGTAVPVHG RDVDKLQHQG YGTLLMEEAE RIARKEHRSK KLAVISGVGT RHYYRKLGYE LEGPYMVKCL A

Best Arabidopsis Sequence Match ( AT5G50320.1 )
(BLAST)

001: MATAVVMNGE LKKQPRPGKG GYQGRGLTEE EARVRAISEI VSTMIERSHR NENVDLNAIK TAACRKYGLA RAPKLVEMIA ALPDSERETL LPKLRAKPVR
101: TASGIAVVAV MSKPHRCPHI ATTGNICVYC PGGPDSDFEY STQSYTGYEP TSMRAIRARY NPYVQARSRI DQLKRLGHSV DKVEFILMGG TFMSLPAEYR
201: DFFIRNLHDA LSGHTSANVE EAVAYSEHSA TKCIGMTIET RPDYCLGPHL RQMLIYGCTR LEIGVQSTYE DVARDTNRGH TVAAVADCFC LAKDAGFKVV
301: AHMMPDLPNV GVERDMESFK EFFESPSFRA DGLKIYPTLV IRGTGLYELW KTGRYRNYPP EQLVDIVARI LSMVPPWTRV YRVQRDIPMP LVTSGVEKGN
401: LRELALARMD DLGLKCRDVR TREAGIQDIH HKIKPEQVEL VRRDYTANEG WETFLSYEDT RQDILVGLLR LRKCGKNVTC PELMGKCSVV RELHVYGTAV
501: PVHGRDADKL QHQGYGTLLM EEAERIARRE HRSNKIGVIS GVGTRHYYRK LGYELEGPYM VKHLL

Arabidopsis Description

HAG3Elongator complex protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.