Factsheet for Solyc03g110910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039303	Potato	cytosol	99.11	99.29
VIT_17s0000g10190.t01	Wine grape	cytosol	94.16	94.49
KRH63718	Soybean	cytosol, nucleus	93.27	93.44
KRH54237	Soybean	cytosol, nucleus	92.39	92.55
AT5G50320.1	Thale cress	cytosol	92.21	92.21
Bra000619.1-P	Field mustard	cytosol	91.86	91.86
CDY34039	Canola	cytosol	91.86	91.86
CDX83163	Canola	cytosol	91.5	91.5
GSMUA_Achr3P02630_001	Banana	cytosol	80.53	91.37
Zm00001d003258_P001	Maize	plastid	90.62	89.82
Zm00001d025713_P001	Maize	plastid	90.62	89.67
Os04t0484900-01	Rice	cytosol	90.8	89.53
EES12405	Sorghum	cytosol	90.44	89.49
TraesCS2B01G361800.1	Wheat	cytosol	90.09	89.46
TraesCS2D01G341600.1	Wheat	cytosol	90.09	89.46
TraesCS2A01G320900.1	Wheat	cytosol	89.91	89.28
HORVU4Hr1G039630.1	Barley	cytosol	10.09	86.36
HORVU2Hr1G083870.1	Barley	plasma membrane	90.09	83.03

Protein Annotations

MapMan:15.3.6.2.3	Gene3D:3.40.630.30	Gene3D:3.80.30.20	InterPro:Acyl_CoA_acyltransferase	InterPro:ELP3-like	InterPro:Elp3/MiaB/NifB
InterPro:GNAT_dom	GO:GO:0002098	GO:GO:0003674	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005719	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152
GO:GO:0008283	GO:GO:0009058	GO:GO:0009294	GO:GO:0009653	GO:GO:0009719	GO:GO:0009987
GO:GO:0010928	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0016746	GO:GO:0019538
GO:GO:0033588	GO:GO:0035265	GO:GO:0040007	GO:GO:0046872	GO:GO:0051536	GO:GO:0090708
GO:GO:2000025	InterPro:IPR000182	InterPro:IPR023404	UniProt:K4BJV4	PFAM:PF00583	PFAM:PF04055
PFAM:PF16199	PIRSF:PIRSF005669	PFscan:PS51186	PANTHER:PTHR11135	PANTHER:PTHR11135:SF0	InterPro:Radical_SAM_C
SMART:SM00729	SUPFAM:SSF102114	SUPFAM:SSF55729	EnsemblPlantsGene:Solyc03g110910.2	EnsemblPlants:Solyc03g110910.2.1	TIGRFAMs:TIGR01211
UniParc:UPI0002768B30	InterPro:rSAM	InterPro:rSAM_horseshoe	SEG:seg	:	:

Description

Elongator complex protein 3 [Source:Projected from Arabidopsis thaliana (AT5G50320) UniProtKB/Swiss-Prot;Acc:Q93ZR1]

Coordinates

chr3:-:61641949..61646431

Molecular Weight (calculated)

63434.5 Da

IEP (calculated)

8.735

GRAVY (calculated)

-0.348

Length

565 amino acids

Sequence
(BLAST)

001: MAAAAVAVAE TRKLPRPGRG GVVSLGLTEE EARVRAITEI VNNMVELSRK GKDVDLNALK SAACRKYGLS RAPKLVEMIA ALPDSERETL LPKLRAKPVR
101: TASGIAVVAV MSKPHRCPHI ATTGNICVYC PGGPDSDFEY STQSYTGYEP TSMRAIRARY NPYVQARSRI DQLKRLGHSV DKVEFILMGG TFMSLPAEYR
201: DYFTRNLHDA LSGHTSANVE EAVAYSEHGA TKCIGMTIET RPDYCLGPHL RQMLSYGCTR LEIGVQSTYE DVARDTNRGH TVAAVADCFC LAKDAGFKVV
301: AHMMPDLPNV GVERDLESFK EFFESPSFRT DGLKIYPTLV IRGTGLYELW KTGRYRNYPP EQLVDIVARI LSMVPPWTRV YRVQRDIPMP LVTSGVEKGN
401: LRELALARMD DLGLKCRDVR TREAGIQDIH NKIRPEEVEL VRRDYTANEG WETFLSYEDT RQDILVGLLR LRKCGRNVTC PELTGRCSIV RELHVYGTAV
501: PVHGRDTDKL QHQGYGTLLM EEAERIARRE HRSTKIAVIS GVGTRHYYRK LGYELEGPYM VKNLV

Best Arabidopsis Sequence Match ( AT5G50320.1 )
(BLAST)

001: MATAVVMNGE LKKQPRPGKG GYQGRGLTEE EARVRAISEI VSTMIERSHR NENVDLNAIK TAACRKYGLA RAPKLVEMIA ALPDSERETL LPKLRAKPVR
101: TASGIAVVAV MSKPHRCPHI ATTGNICVYC PGGPDSDFEY STQSYTGYEP TSMRAIRARY NPYVQARSRI DQLKRLGHSV DKVEFILMGG TFMSLPAEYR
201: DFFIRNLHDA LSGHTSANVE EAVAYSEHSA TKCIGMTIET RPDYCLGPHL RQMLIYGCTR LEIGVQSTYE DVARDTNRGH TVAAVADCFC LAKDAGFKVV
301: AHMMPDLPNV GVERDMESFK EFFESPSFRA DGLKIYPTLV IRGTGLYELW KTGRYRNYPP EQLVDIVARI LSMVPPWTRV YRVQRDIPMP LVTSGVEKGN
401: LRELALARMD DLGLKCRDVR TREAGIQDIH HKIKPEQVEL VRRDYTANEG WETFLSYEDT RQDILVGLLR LRKCGKNVTC PELMGKCSVV RELHVYGTAV
501: PVHGRDADKL QHQGYGTLLM EEAERIARRE HRSNKIGVIS GVGTRHYYRK LGYELEGPYM VKHLL

Arabidopsis Description

HAG3Elongator complex protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.