CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54237	Soybean	cytosol, nucleus	98.4	98.4
VIT_17s0000g10190.t01	Wine grape	cytosol	94.33	94.49
PGSC0003DMT400039303	Potato	cytosol	93.44	93.44
Solyc03g110910.2.1	Tomato	cytosol, nucleus	93.44	93.27
AT5G50320.1	Thale cress	cytosol	92.02	91.86
GSMUA_Achr3P02630_001	Banana	cytosol	80.67	91.37
CDY34039	Canola	cytosol	91.31	91.15
Bra000619.1-P	Field mustard	cytosol	91.13	90.97
CDX83163	Canola	cytosol	90.78	90.62
HORVU4Hr1G039630.1	Barley	cytosol	10.46	89.39
TraesCS2B01G361800.1	Wheat	cytosol	89.89	89.1
TraesCS2D01G341600.1	Wheat	cytosol	89.89	89.1
Zm00001d003258_P001	Maize	plastid	89.89	88.95
TraesCS2A01G320900.1	Wheat	cytosol	89.72	88.93
Os04t0484900-01	Rice	cytosol	90.25	88.83
EES12405	Sorghum	cytosol	89.89	88.79
Zm00001d025713_P001	Maize	plastid	89.54	88.44
HORVU2Hr1G083870.1	Barley	plasma membrane	89.89	82.71

Protein Annotations

EntrezGene:100818764	MapMan:15.3.6.2.3	Gene3D:3.40.630.30	Gene3D:3.80.30.20	EMBL:ACUP02002708	InterPro:Acyl_CoA_acyltransferase
InterPro:ELP3-like	InterPro:Elp3/MiaB/NifB	EnsemblPlantsGene:GLYMA_04G192900	InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004402	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006464
GO:GO:0008080	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016573	GO:GO:0016740	GO:GO:0016746	GO:GO:0019538	GO:GO:0033588	GO:GO:0046872
GO:GO:0051536	UniProt:I1JXG5	InterPro:IPR000182	InterPro:IPR023404	EnsemblPlants:KRH63718	ProteinID:KRH63718
ProteinID:KRH63718.1	PFAM:PF00583	PFAM:PF04055	PFAM:PF16199	PIRSF:PIRSF005669	PFscan:PS51186
PANTHER:PTHR11135	PANTHER:PTHR11135:SF0	InterPro:Radical_SAM_C	SMART:SM00729	SUPFAM:SSF102114	SUPFAM:SSF55729
TIGRFAMs:TIGR01211	UniParc:UPI0002339373	InterPro:rSAM	InterPro:rSAM_horseshoe	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:46448936..46454146

Molecular Weight (calculated)

63325.5 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.326

Length

564 amino acids

Sequence
(BLAST)

001: MAAAAVAEVR KAPRPGKGGY EAHGLSEEEA RVRAIAEIVS SMVDLSHKGQ NVDLNALKSA ACRKYGLSRA PKLVEMIAAL PDAERETLLP KLRAKPVRTA
101: SGIAVVAVMS KPHRCPHIAT TGNICVYCPG GPDSDFEYST QSYTGYEPTS MRAIRARYNP YVQARSRIDQ LKRLGHSVDK VEFILMGGTF MSLPADYRDY
201: FIRNLHDALS GHTSANVEEA VAYSEHGATK CIGMTIETRP DYCLGPHLRQ MLSYGCTRLE IGVQSTYEDV ARDTNRGHTV AAVADCFCLA KDAGFKVVAH
301: MMPDLPNVGV ERDMESFREF FESPMFRADG LKIYPTLVIR GTGLYELWKT GRYRNYPPEQ LVDIIARILA MVPPWTRVYR VQRDIPMPLV TSGVEKGNLR
401: ELALARMDDL GLKCRDVRTR EAGIQDIHHQ IKPEEVELVR RDYMANEGWE TFLSYEDTRQ DILVGLLRLR KCGRNTTCPE LMGKCSIVRE LHVYGTAVPV
501: HGRDADKLQH QGYGTLLMEE AERIACREHR STKIAVISGV GTRHYYRKLG YELEGPYMVK YLVK

Best Arabidopsis Sequence Match ( AT5G50320.1 )
(BLAST)

001: MATAVVMNGE LKKQPRPGKG GYQGRGLTEE EARVRAISEI VSTMIERSHR NENVDLNAIK TAACRKYGLA RAPKLVEMIA ALPDSERETL LPKLRAKPVR
101: TASGIAVVAV MSKPHRCPHI ATTGNICVYC PGGPDSDFEY STQSYTGYEP TSMRAIRARY NPYVQARSRI DQLKRLGHSV DKVEFILMGG TFMSLPAEYR
201: DFFIRNLHDA LSGHTSANVE EAVAYSEHSA TKCIGMTIET RPDYCLGPHL RQMLIYGCTR LEIGVQSTYE DVARDTNRGH TVAAVADCFC LAKDAGFKVV
301: AHMMPDLPNV GVERDMESFK EFFESPSFRA DGLKIYPTLV IRGTGLYELW KTGRYRNYPP EQLVDIVARI LSMVPPWTRV YRVQRDIPMP LVTSGVEKGN
401: LRELALARMD DLGLKCRDVR TREAGIQDIH HKIKPEQVEL VRRDYTANEG WETFLSYEDT RQDILVGLLR LRKCGKNVTC PELMGKCSVV RELHVYGTAV
501: PVHGRDADKL QHQGYGTLLM EEAERIARRE HRSNKIGVIS GVGTRHYYRK LGYELEGPYM VKHLL

Arabidopsis Description

HAG3Elongator complex protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.