CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90948	cytosol
EER95025	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34760.1	EER95025	AT5G58550.1	23512855
AT1G34760.1	EER90948	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G148900.2	Wheat	cytosol	78.54	77.91
HORVU4Hr1G031620.11	Barley	cytosol	76.92	70.37
TraesCS4A01G167100.1	Wheat	cytosol	68.83	69.67
GSMUA_Achr2P22240_001	Banana	cytosol	60.32	57.98
PGSC0003DMT400016422	Potato	cytosol	58.7	57.54
Bra031383.1-P	Field mustard	cytosol	58.7	57.31
CDY38227	Canola	cytosol	58.7	57.31
CDY69181	Canola	cytosol	58.7	57.31
VIT_18s0001g05720.t01	Wine grape	cytosol	58.3	57.14
AT1G22300.1	Thale cress	cytosol	58.7	57.09
Os11t0609600-01	Rice	cytosol	46.15	57.0
Zm00001d048868_P002	Maize	extracellular	95.14	54.78
Solyc04g074230.2.1	Tomato	extracellular	58.7	54.51
AT1G34760.1	Thale cress	cytosol	56.28	54.51
CDY48771	Canola	cytosol	36.44	49.45
OQU83613	Sorghum	cytosol	53.04	49.25
OQU80487	Sorghum	cytosol	51.01	49.22
EES15274	Sorghum	cytosol	50.2	49.01
EES10954	Sorghum	cytosol	51.01	48.28
EES14338	Sorghum	cytosol	49.8	47.49
CDX91673	Canola	cytosol	50.2	46.1
AT1G22290.2	Thale cress	cytosol	31.98	36.57
CDY03135	Canola	cytosol	51.82	32.49

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1	EntrezGene:8066716
UniProt:C5Y6A4	ncoils:Coil	EnsemblPlants:EES10091	ProteinID:EES10091	ProteinID:EES10091.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815	PFAM:PF00244	PIRSF:PIRSF000868
PRINTS:PR00305	PANTHER:PTHR18860	PANTHER:PTHR18860:SF58	SMART:SM00101	EnsemblPlantsGene:SORBI_3005G183200	SUPFAM:SSF48445
unigene:Sbi.6286	UniParc:UPI0001A86AC2	RefSeq:XP_002451103.1	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:66636546..66642481

Molecular Weight (calculated)

27956.4 Da

IEP (calculated)

4.949

GRAVY (calculated)

-0.274

Length

247 amino acids

Sequence
(BLAST)

001: MEEREKLVCL AKLAEQAERY DDMVEFMKNL ARMDVDMSAE ERHLFSVGFK NTIGAKRASW RIICSHEQKV TTDRQTGVMI DAYKKIVEDE LRKVCNEVLS
101: VIAIHCLPLA NTSENVVFFY KMKGDYYRYL AEFSSGTEKK AASDQSLMAY QHAMVVASSE LSPAHQIRLG LALNLSVFFY EIMNSHERAC QVAKQAFNEA
201: LTEINSGEGV YKDSTLMMQL LKDNLALWTS ELTGGEASKD NDVDMEG

Best Arabidopsis Sequence Match ( AT1G22300.1 )
(BLAST)

001: MENEREKQVY LAKLSEQTER YDEMVEAMKK VAQLDVELTV EERNLVSVGY KNVIGARRAS WRILSSIEQK EESKGNDENV KRLKNYRKRV EDELAKVCND
101: ILSVIDKHLI PSSNAVESTV FFYKMKGDYY RYLAEFSSGA ERKEAADQSL EAYKAAVAAA ENGLAPTHPV RLGLALNFSV FYYEILNSPE SACQLAKQAF
201: DDAIAELDSL NEESYKDSTL IMQLLRDNLT LWTSDLNEEG DERTKGADEP QDEN

Arabidopsis Description

GRF10GRF10 [Source:UniProtKB/TrEMBL;Acc:A0A178W0Z4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.