Factsheet for PGSC0003DMT400016422

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008587	cytosol
PGSC0003DMT400008605	cytosol
PGSC0003DMT400013977	cytosol
PGSC0003DMT400051035	nucleus
PGSC0003DMT400055203	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34760.1	PGSC0003DMT400051035	AT5G58550.1	23512855
AT1G34760.1	PGSC0003DMT400008587	AT5G65800.1	23512855
AT1G34760.1	PGSC0003DMT400008605	AT5G65800.1	23512855
AT1G34760.1	PGSC0003DMT400013977	AT5G65800.1	23512855
AT1G34760.1	PGSC0003DMT400055203	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074230.2.1	Tomato	extracellular	96.03	90.98
VIT_18s0001g05720.t01	Wine grape	cytosol	88.49	88.49
CDY38227	Canola	cytosol	80.95	80.63
Bra031383.1-P	Field mustard	cytosol	80.56	80.24
CDY69181	Canola	cytosol	80.56	80.24
AT1G34760.1	Thale cress	cytosol	80.95	80.0
AT1G22300.1	Thale cress	cytosol	80.56	79.92
PGSC0003DMT400052619	Potato	cytosol	77.78	75.1
PGSC0003DMT400020200	Potato	cytosol	76.19	74.13
CDY48771	Canola	cytosol	51.98	71.98
PGSC0003DMT400072941	Potato	cytosol	81.35	71.93
GSMUA_Achr2P22240_001	Banana	cytosol	69.44	68.09
PGSC0003DMT400062153	Potato	cytosol	69.05	66.92
PGSC0003DMT400060654	Potato	cytosol	67.46	66.67
PGSC0003DMT400050389	Potato	cytosol	68.65	66.54
PGSC0003DMT400041810	Potato	cytosol	67.86	66.28
PGSC0003DMT400045782	Potato	cytosol	66.67	66.14
PGSC0003DMT400079172	Potato	cytosol	67.86	66.02
PGSC0003DMT400041634	Potato	cytosol	62.7	63.45
PGSC0003DMT400033585	Potato	cytosol	62.7	62.7
CDX91673	Canola	cytosol	63.49	59.48
EES10091	Sorghum	cytosol	57.54	58.7
TraesCS4B01G148900.2	Wheat	cytosol	55.16	55.82
HORVU4Hr1G031620.11	Barley	cytosol	54.76	51.11
AT1G22290.2	Thale cress	cytosol	43.65	50.93
TraesCS4A01G167100.1	Wheat	cytosol	49.21	50.82
CDY03135	Canola	cytosol	76.19	48.73
Os11t0609600-01	Rice	cytosol	33.33	42.0
Zm00001d048868_P002	Maize	extracellular	57.94	34.03

Protein Annotations

Gene3D:1.20.190.20	EntrezGene:102581950	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain
MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904
InterPro:IPR036815	EMBL:LC011872	UniProt:M1A7M4	PFAM:PF00244	EnsemblPlantsGene:PGSC0003DMG400006415	PGSC:PGSC0003DMG400006415
EnsemblPlants:PGSC0003DMT400016422	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860
PANTHER:PTHR18860:SF59	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI0000124DEA	RefSeq:XP_006364862.1	:

Description

14-3-3 protein 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400006415]

Coordinates

chr4:-:63548091..63551999

Molecular Weight (calculated)

28815.7 Da

IEP (calculated)

4.681

GRAVY (calculated)

-0.659

Length

252 amino acids

Sequence
(BLAST)

001: MEKEREKQVY LARLAEQAER YDEMVEAMKA IAKMDVELTV EERNLVSVGY KNVIGARRAS WRILSSIEQK EESKGHEQNV KRIKTYRQRV EDELTKICSD
101: ILSVIDEHLV PSSTTGESTV FYYKMKGDYY RYLAEFKAGD DRKEASEQSL KAYEAATATA SSDLAPTHPI RLGLALNFSV FYYEILNSPE RACHLAKQAF
201: DEAIAELDSL SEESYKDSTL IMQLLRDNLT LWTSDLEEGG EHSKGDERQG EN

Best Arabidopsis Sequence Match ( AT1G34760.2 )
(BLAST)

001: MENERAKQVY LAKLNEQAER YDEMVEAMKK VAALDVELTI EERNLLSVGY KNVIGARRAS WRILSSIEQK EESKGNEQNA KRIKDYRTKV EEELSKICYD
101: ILAVIDKHLV PFATSGESTV FYYKMKGDYF RYLAEFKSGA DREEAADLSL KAYEAATSSA STELSTTHPI RLGLALNFSV FYYEILNSPE RACHLAKRAF
201: DEAIAELDSL NEDSYKDSTL IMQLLRDNLT LWTSDLEEGG EQSKGHNQQD EN

Arabidopsis Description

GRF11general regulatory factor 11 [Source:TAIR;Acc:AT1G34760]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.