Factsheet for Solyc04g074230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063540.1.1	cytosol
Solyc02g091990.2.1	cytosol
Solyc03g043890.2.1	cytosol
Solyc09g055310.2.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34760.1	Solyc09g055310.2.1	AT5G58550.1	23512855
AT1G34760.1	Solyc02g063540.1.1	AT5G65800.1	23512855
AT1G34760.1	Solyc02g091990.2.1	AT5G65800.1	23512855
AT1G34760.1	Solyc03g043890.2.1	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016422	Potato	cytosol	90.98	96.03
VIT_18s0001g05720.t01	Wine grape	cytosol	81.95	86.51
CDY38227	Canola	cytosol	75.19	79.05
Bra031383.1-P	Field mustard	cytosol	74.81	78.66
CDY69181	Canola	cytosol	74.81	78.66
AT1G34760.1	Thale cress	cytosol	75.19	78.43
AT1G22300.1	Thale cress	cytosol	74.81	78.35
Solyc07g053260.2.1	Tomato	plastid	72.93	74.33
Solyc01g010360.2.1	Tomato	cytosol	75.19	72.99
Solyc12g010860.1.1	Tomato	plastid	69.92	71.26
Solyc05g012420.2.1	Tomato	unclear	75.94	70.88
CDY48771	Canola	cytosol	48.12	70.33
GSMUA_Achr2P22240_001	Banana	cytosol	66.17	68.48
Solyc03g034180.2.1	Tomato	cytosol	65.41	67.44
Solyc04g012120.2.1	Tomato	extracellular, nucleus	63.91	66.67
Solyc12g057110.2.1	Tomato	extracellular, nucleus	63.53	66.54
Solyc02g063070.2.1	Tomato	plastid	64.66	66.15
Solyc04g074510.2.1	Tomato	extracellular, nucleus	63.91	63.43
Solyc11g010470.1.1	Tomato	extracellular, nucleus	59.02	63.05
Solyc11g010200.1.1	Tomato	nucleus	63.53	62.83
Solyc04g076060.2.1	Tomato	nucleus	59.4	62.7
CDX91673	Canola	cytosol	60.53	59.85
EES10091	Sorghum	cytosol	54.51	58.7
TraesCS4B01G148900.2	Wheat	cytosol	52.26	55.82
HORVU4Hr1G031620.11	Barley	cytosol	51.88	51.11
AT1G22290.2	Thale cress	cytosol	41.35	50.93
TraesCS4A01G167100.1	Wheat	cytosol	46.24	50.41
CDY03135	Canola	cytosol	70.3	47.46
Os11t0609600-01	Rice	cytosol	31.58	42.0
Zm00001d048868_P002	Maize	extracellular	54.89	34.03

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
UniProt:K4BTW1	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF59	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:Solyc04g074230.2	EnsemblPlants:Solyc04g074230.2.1
UniParc:UPI000276739B	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:60219831..60223658

Molecular Weight (calculated)

30626.3 Da

IEP (calculated)

4.942

GRAVY (calculated)

-0.450

Length

266 amino acids

Sequence
(BLAST)

001: MEKEREKQVY LARLAEQAER YDEMVEAMKA IAKMDVELTV EERNLVSVGY KNVIGARRAS WRILSSIEQK EESKGHEQNV KRIKTYRQRV EDELTKICSD
101: ILSVIDEHLV PSSTTGESTV FYYKMKGDYY RYLAEFKAGD DRKEASEQSL KAYEAATATA SSDLAPTHPI RLGLALNFSV FYYEILNSPE RACHLAKQAF
201: DEAIAELDSL SEESYKDSTL IMQLLRDNLT LWTSDLEEGG TYFLWRCFNV FLVSILRVMS ARERTS

Best Arabidopsis Sequence Match ( AT1G34760.1 )
(BLAST)

001: MENERAKQVY LAKLNEQAER YDEMVEAMKK VAALDVELTI EERNLLSVGY KNVIGARRAS WRILSSIEQK EESKGNEQNA KRIKDYRTKV EEELSKICYD
101: ILAVIDKHLV PFATSGESTV FYYKMKGDYF RYLAEFKSGA DREEAADLSL KAYEAATSSA STELSTTHPI RLGLALNFSV FYYEILNSPE RACHLAKRAF
201: DEAIAELDSL NEDSYKDSTL IMQLLRDNLT LWTSDLEEGG EQSKGHNQQD EVNKI

Arabidopsis Description

GRF11general regulatory factor 11 [Source:TAIR;Acc:AT1G34760]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.