Factsheet for Solyc05g012420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063540.1.1	cytosol
Solyc02g091990.2.1	cytosol
Solyc03g043890.2.1	cytosol
Solyc09g055310.2.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	Solyc09g055310.2.1	AT5G58550.1	23512855
AT1G26480.1	Solyc02g063540.1.1	AT5G65800.1	23512855
AT1G26480.1	Solyc02g091990.2.1	AT5G65800.1	23512855
AT1G26480.1	Solyc03g043890.2.1	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072941	Potato	cytosol	98.6	98.6
VIT_01s0011g00620.t01	Wine grape	cytosol	82.81	89.06
KRH70879	Soybean	endoplasmic reticulum	80.0	88.03
KRH75027	Soybean	endoplasmic reticulum	79.3	87.26
Solyc01g010360.2.1	Tomato	cytosol	83.16	86.5
KRH50527	Soybean	cytosol	77.89	85.71
KRG89486	Soybean	cytosol	77.89	85.38
Bra024713.1-P	Field mustard	cytosol	79.65	85.02
CDY16161	Canola	cytosol	79.3	84.01
CDX85023	Canola	cytosol	78.95	83.33
Bra016273.1-P	Field mustard	cytosol	78.95	83.33
CDY40251	Canola	cytosol	71.58	83.27
AT1G26480.1	Thale cress	cytosol	77.54	82.46
Solyc04g074230.2.1	Tomato	extracellular	70.88	75.94
CDY20560	Canola	cytosol	70.53	75.28
Solyc07g053260.2.1	Tomato	plastid	68.77	75.1
Solyc12g010860.1.1	Tomato	plastid	67.02	73.18
Solyc12g057110.2.1	Tomato	extracellular, nucleus	63.51	71.26
Solyc03g034180.2.1	Tomato	cytosol	63.51	70.16
Solyc04g012120.2.1	Tomato	extracellular, nucleus	62.46	69.8
Solyc02g063070.2.1	Tomato	plastid	63.16	69.23
CDY61631	Canola	cytosol	78.95	68.6
CDY24128	Canola	cytosol	78.6	68.29
Solyc04g074510.2.1	Tomato	extracellular, nucleus	62.81	66.79
Bra012455.1-P	Field mustard	cytosol	71.23	66.56
Solyc11g010200.1.1	Tomato	nucleus	62.46	66.17
Solyc11g010470.1.1	Tomato	extracellular, nucleus	57.54	65.86
Solyc04g076060.2.1	Tomato	nucleus	56.84	64.29

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
UniProt:K4BXW5	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF59	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:Solyc05g012420.2	EnsemblPlants:Solyc05g012420.2.1
UniParc:UPI000276569A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:5666263..5669472

Molecular Weight (calculated)

32196.7 Da

IEP (calculated)

4.647

GRAVY (calculated)

-0.701

Length

285 amino acids

Sequence
(BLAST)

001: MASQKERETH VYMAKLAEQA ERYDEMVESM KKVAKLDVEL TVEERNLLSV GYKNVIGARR ASWRIMSSIE QKEESKGNEQ NVKLIKGYRQ KVEEELSKIC
101: SDILDIIDKH LIPSAGTGEA TVFYYKMKGD YFRYLAEFKT DSERKEASEQ SLKGYEAATA TANTDLSSTH PIRLGLALNF SVFYYEIMNS PERACHLAKQ
201: AFDEAIAELD TLSEESYKDS TLIMQLLRDN LTLWTSDLPE DGGEENVKTD EPKAVEPKSA DAKSAEAKST EAKSVEPEEA SKDKQ

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.