CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98245	nucleus
KRH04373	cytosol
KRH17084	nucleus
KRH28319	cytosol
KRH30203	nucleus
KRH58165	cytosol
KRH72722	nucleus
KRH77167	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	KRG98245	AT5G58550.1	23512855
AT1G26480.1	KRH17084	AT5G58550.1	23512855
AT1G26480.1	KRH30203	AT5G58550.1	23512855
AT1G26480.1	KRH72722	AT5G58550.1	23512855
AT1G26480.1	KRH04373	AT5G65800.1	23512855
AT1G26480.1	KRH28319	AT5G65800.1	23512855
AT1G26480.1	KRH58165	AT5G65800.1	23512855
AT1G26480.1	KRH77167	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50527	Soybean	cytosol	98.46	98.84
KRH70879	Soybean	endoplasmic reticulum	88.46	88.8
KRH75027	Soybean	endoplasmic reticulum	88.08	88.42
VIT_01s0011g00620.t01	Wine grape	cytosol	89.23	87.55
Bra024713.1-P	Field mustard	cytosol	84.62	82.4
CDY16161	Canola	cytosol	84.62	81.78
CDX85023	Canola	cytosol	84.62	81.48
AT1G26480.1	Thale cress	cytosol	83.85	81.34
Bra016273.1-P	Field mustard	cytosol	83.85	80.74
Solyc01g010360.2.1	Tomato	cytosol	84.23	79.93
CDY40251	Canola	cytosol	73.85	78.37
Solyc05g012420.2.1	Tomato	unclear	85.38	77.89
PGSC0003DMT400072941	Potato	cytosol	85.38	77.89
KRH58958	Soybean	endoplasmic reticulum	74.62	74.9
KRH42856	Soybean	nucleus	74.62	74.9
KRH27042	Soybean	nucleus	75.0	74.71
KRH22287	Soybean	nucleus, plasma membrane	75.0	74.71
CDY20560	Canola	cytosol	73.46	71.54
KRH21981	Soybean	cytosol	71.92	71.1
KRH27339	Soybean	cytosol	70.77	69.43
KRH72385	Soybean	endoplasmic reticulum, nucleus	69.23	68.7
KRH01783	Soybean	nucleus	66.92	67.7
CDY61631	Canola	cytosol	83.85	66.46
CDY24128	Canola	cytosol	83.46	66.16
KRH46909	Soybean	cytosol	66.15	66.15
KRH62193	Soybean	endoplasmic reticulum	62.31	64.8
KRH52909	Soybean	endoplasmic reticulum	62.31	64.8
Bra012455.1-P	Field mustard	cytosol	73.85	62.95
KRG89721	Soybean	cytosol	16.92	62.86
KRH53025	Soybean	cytosol	67.31	62.72
KRH62315	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	68.85	62.15
KRH16772	Soybean	cytosol	69.62	57.64
KRH05108	Soybean	cytosol	30.0	49.06

Protein Annotations

Gene3D:1.20.190.20	EntrezGene:100815948	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain
MapMan:35.1	EMBL:ACUP02012213	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G025900	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0019904	UniProt:I1NDI4	InterPro:IPR036815	EnsemblPlants:KRG89486	ProteinID:KRG89486
ProteinID:KRG89486.1	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF12	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI0002953DFE	:

Description

hypothetical protein

Coordinates

chr20:-:2844505..2851779

Molecular Weight (calculated)

29641.8 Da

IEP (calculated)

4.497

GRAVY (calculated)

-0.612

Length

260 amino acids

Sequence
(BLAST)

001: MSTEKERETQ VYLAKLSEQA ERYEEMVECM KTIAKLDLEL TVEERNLLSV GYKNVIGARR ASWRIMSSIE QKEESKGNES NAKLIKNYRQ KVEEELSKIC
101: SDILSIIDQH LVPSSTSGEA TVFYYKMKGD YYRYLAEFKT DQDRKEAAEQ SLKGYEAALA TASTELPSTH PIRLGLALNF SVFYYEILNS PERACHLAKQ
201: AFDEAIAELD TLSEESYKDS TLIMQLLRDN LTLWTSDLPE DGGDEIKTEE AKPAETSEHS

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.