Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26480.1 | CDY14376 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDY32974 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDY66209 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDX81296 | AT5G65800.1 | 23512855 |
| AT1G26480.1 | CDY18674 | AT5G65800.1 | 23512855 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016273.1-P | Field mustard | cytosol | 82.32 | 100.0 |
| CDY24128 | Canola | cytosol | 98.17 | 98.17 |
| CDY16161 | Canola | cytosol | 78.35 | 95.54 |
| CDX85023 | Canola | cytosol | 78.35 | 95.19 |
| CDY40251 | Canola | cytosol | 70.43 | 94.29 |
| AT1G26480.1 | Thale cress | cytosol | 76.83 | 94.03 |
| CDY20560 | Canola | cytosol | 72.56 | 89.14 |
| KRH70879 | Soybean | endoplasmic reticulum | 67.07 | 84.94 |
| KRH75027 | Soybean | endoplasmic reticulum | 66.46 | 84.17 |
| KRH50527 | Soybean | cytosol | 66.46 | 84.17 |
| KRG89486 | Soybean | cytosol | 66.46 | 83.85 |
| VIT_01s0011g00620.t01 | Wine grape | cytosol | 67.68 | 83.77 |
| Solyc01g010360.2.1 | Tomato | cytosol | 66.16 | 79.2 |
| Solyc05g012420.2.1 | Tomato | unclear | 68.6 | 78.95 |
| PGSC0003DMT400072941 | Potato | cytosol | 67.99 | 78.25 |
| CDY69181 | Canola | cytosol | 58.23 | 75.49 |
| CDY38227 | Canola | cytosol | 57.93 | 75.1 |
| CDX91996 | Canola | cytosol | 55.49 | 69.73 |
| CDY61201 | Canola | cytosol | 57.62 | 69.49 |
| CDY42826 | Canola | cytosol | 57.01 | 69.0 |
| CDX74252 | Canola | cytosol | 54.88 | 68.97 |
| CDY51543 | Canola | cytosol | 54.88 | 68.97 |
| CDY28698 | Canola | cytosol | 54.88 | 68.97 |
| CDX74521 | Canola | cytosol | 53.96 | 68.87 |
| CDY01659 | Canola | cytosol | 53.96 | 68.87 |
| CDY71290 | Canola | cytosol | 53.35 | 68.09 |
| CDX67405 | Canola | cytosol | 53.35 | 67.83 |
| CDY48771 | Canola | cytosol | 37.2 | 67.03 |
| CDY28408 | Canola | cytosol | 53.35 | 66.54 |
| CDX68022 | Canola | cytosol | 52.74 | 66.54 |
| CDX79255 | Canola | cytosol | 52.74 | 66.54 |
| CDX88436 | Canola | cytosol | 52.74 | 66.54 |
| CDY12024 | Canola | cytosol | 52.44 | 65.9 |
| CDY14618 | Canola | cytosol | 52.13 | 65.77 |
| CDX73313 | Canola | cytosol | 53.05 | 65.66 |
| CDY08794 | Canola | cytosol | 49.09 | 64.92 |
| CDY14562 | Canola | cytosol | 48.78 | 64.52 |
| CDY41483 | Canola | cytosol | 50.91 | 64.48 |
| CDX91676 | Canola | cytosol | 50.61 | 64.09 |
| CDX81287 | Canola | cytosol | 48.48 | 63.86 |
| CDY54716 | Canola | cytosol | 48.48 | 63.86 |
| CDY00447 | Canola | cytosol | 50.0 | 63.08 |
| CDY46646 | Canola | cytosol | 50.0 | 63.08 |
| CDY40098 | Canola | cytosol | 47.56 | 62.9 |
| CDX85759 | Canola | cytosol | 47.56 | 62.9 |
| CDX78381 | Canola | cytosol | 47.87 | 62.8 |
| CDX81179 | Canola | cytosol | 47.87 | 62.8 |
| CDX97016 | Canola | cytosol | 41.77 | 60.09 |
| CDX87455 | Canola | cytosol | 52.74 | 57.86 |
| CDX91673 | Canola | cytosol | 46.95 | 57.25 |
| CDX87464 | Canola | cytosol | 31.1 | 48.11 |
| CDX88428 | Canola | cytosol | 35.06 | 47.72 |
| CDY03135 | Canola | cytosol | 56.1 | 46.7 |
| CDY52206 | Canola | mitochondrion | 27.13 | 45.18 |
| CDY56386 | Canola | mitochondrion | 27.13 | 45.18 |
| CDX97014 | Canola | cytosol, plastid | 13.72 | 40.91 |
Protein Annotations
| Gene3D:1.20.190.20 | InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 |
| GO:A0A078JBV2 | UniProt:A0A078JBV2 | EnsemblPlants:CDY61631 | ProteinID:CDY61631 | ProteinID:CDY61631.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019904 | EnsemblPlantsGene:GSBRNA2T00034122001 | InterPro:IPR036815 | PFAM:PF00244 | PRINTS:PR00305 | ScanProsite:PS00796 |
| ScanProsite:PS00797 | PANTHER:PTHR18860 | PANTHER:PTHR18860:SF59 | SMART:SM00101 | SUPFAM:SSF48445 | UniParc:UPI0004EDBA7A |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g19740DBnaA08g19740D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JBV2]
Coordinates
chrLK034018:+:33868..35449
Molecular Weight (calculated)
37704.2 Da
IEP (calculated)
4.711
GRAVY (calculated)
-0.605
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGSDKDRE TFVYLAKLSE QAERYDEMVE TMKKVAKVDS ELTVEERNLL SVGYKNVIGA RRASWRIMSS IEQKEESKGN ESNVKHIKGY RQKVEDELAD
101: ICKDILTIID QHLIPHATSG EATVFYYKMK GDYYRYLAEF KTEQERKEAS EQSLKGYEAA TQAASTDLPS THPIRLGLAL NFSVFYYEIM NSPERACHLA
201: KQAFDEAIAE LDTLSEESYK DSTLIMQLLR DNLTLWTSDL PEDGGEDNIK TDEAKQEPAK PAEATEVTNL TDRRLWKLNE FRFDAQKGED NSFEFHSLVL
301: SRRCDQKQLN SILYSFSFVT FLLFTFLS
101: ICKDILTIID QHLIPHATSG EATVFYYKMK GDYYRYLAEF KTEQERKEAS EQSLKGYEAA TQAASTDLPS THPIRLGLAL NFSVFYYEIM NSPERACHLA
201: KQAFDEAIAE LDTLSEESYK DSTLIMQLLR DNLTLWTSDL PEDGGEDNIK TDEAKQEPAK PAEATEVTNL TDRRLWKLNE FRFDAQKGED NSFEFHSLVL
301: SRRCDQKQLN SILYSFSFVT FLLFTFLS
001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN
Arabidopsis Description
GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.