CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81296	cytosol
CDY14376	nucleus
CDY18674	cytosol
CDY32974	nucleus
CDY66209	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	CDY14376	AT5G58550.1	23512855
AT1G26480.1	CDY32974	AT5G58550.1	23512855
AT1G26480.1	CDY66209	AT5G58550.1	23512855
AT1G26480.1	CDX81296	AT5G65800.1	23512855
AT1G26480.1	CDY18674	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40251	Canola	cytosol	90.26	98.37
Bra012455.1-P	Field mustard	cytosol	99.25	86.89
CDY16161	Canola	cytosol	84.64	84.01
CDX85023	Canola	cytosol	84.27	83.33
AT1G26480.1	Thale cress	cytosol	82.77	82.46
KRH70879	Soybean	endoplasmic reticulum	72.28	74.52
VIT_01s0011g00620.t01	Wine grape	cytosol	73.78	74.34
KRH50527	Soybean	cytosol	71.91	74.13
KRH75027	Soybean	endoplasmic reticulum	71.91	74.13
KRG89486	Soybean	cytosol	71.54	73.46
CDY61631	Canola	cytosol	89.14	72.56
CDY24128	Canola	cytosol	88.39	71.95
Solyc01g010360.2.1	Tomato	cytosol	72.66	70.8
Solyc05g012420.2.1	Tomato	unclear	75.28	70.53
PGSC0003DMT400072941	Potato	cytosol	74.53	69.82
CDY69181	Canola	cytosol	63.67	67.19
CDY48771	Canola	cytosol	45.69	67.03
CDY38227	Canola	cytosol	63.3	66.8
CDY61201	Canola	cytosol	62.55	61.4
CDY42826	Canola	cytosol	62.17	61.25
CDX91996	Canola	cytosol	59.55	60.92
CDX74521	Canola	cytosol	58.43	60.7
CDY01659	Canola	cytosol	58.43	60.7
CDY71290	Canola	cytosol	58.05	60.31
CDY28698	Canola	cytosol	58.8	60.15
CDX74252	Canola	cytosol	58.8	60.15
CDY51543	Canola	cytosol	58.8	60.15
CDX67405	Canola	cytosol	58.05	60.08
CDX68022	Canola	cytosol	56.93	58.46
CDX79255	Canola	cytosol	56.93	58.46
CDX88436	Canola	cytosol	56.93	58.46
CDY14618	Canola	cytosol	56.55	58.08
CDY08794	Canola	cytosol	53.56	57.66
CDY12024	Canola	cytosol	56.18	57.47
CDY28408	Canola	cytosol	56.55	57.41
CDY14562	Canola	cytosol	53.18	57.26
CDX81287	Canola	cytosol	52.81	56.63
CDY54716	Canola	cytosol	52.81	56.63
CDX73313	Canola	cytosol	56.18	56.6
CDY41483	Canola	cytosol	54.68	56.37
CDX91676	Canola	cytosol	54.31	55.98
CDY40098	Canola	cytosol	51.69	55.65
CDX85759	Canola	cytosol	51.69	55.65
CDX78381	Canola	cytosol	52.06	55.6
CDX81179	Canola	cytosol	52.06	55.6
CDY00447	Canola	cytosol	53.93	55.38
CDY46646	Canola	cytosol	53.93	55.38
CDX91673	Canola	cytosol	53.18	52.79
CDX97016	Canola	cytosol	44.94	52.63
CDX87455	Canola	cytosol	57.3	51.17
CDX87464	Canola	cytosol	33.71	42.45
CDX88428	Canola	cytosol	38.2	42.32
CDX97014	Canola	cytosol, plastid	16.85	40.91
CDY03135	Canola	cytosol	59.93	40.61
CDY56386	Canola	mitochondrion	29.21	39.59
CDY52206	Canola	mitochondrion	29.21	39.59

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
GO:A0A078G224	UniProt:A0A078G224	EnsemblPlants:CDY20560	ProteinID:CDY20560	ProteinID:CDY20560.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	EnsemblPlantsGene:GSBRNA2T00012709001	InterPro:IPR036815
PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF59
SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI0004EDFEE5	:	:	:

Description

BnaC07g12270DBnaC07g12270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G224]

Coordinates

chrLK032109:-:430803..432281

Molecular Weight (calculated)

30724.7 Da

IEP (calculated)

4.468

GRAVY (calculated)

-0.708

Length

267 amino acids

Sequence
(BLAST)

001: MSSGSDKERE TFVYTAKLSE QAERYDEMVE TMKKVAKVDS ELTVEERNLL SKEESKGNET NVKHIKGYRQ KVEDELADIC KDILSIIDQH LIPHATSGEA
101: TVFYYKMKGD YYRYLAEFKT EQERKEASEQ SLKGYEAATQ AASTDLPSTH PIRLGLALNF SVFYYEIMNS PERACHLAKQ AFDEAIAELD TLSEESYKDS
201: TLIMQLLRDN LTLWTSDLPE DGGEDNVKSD QEHCKIIEAT DFRLNSTSWF RQGDETNEFK FYNVLFS

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.