CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81296
CDY18674

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58550.1	CDX81296	AT5G65800.1	15118728
AT5G58550.1	CDY18674	AT5G65800.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002638.1-P	Field mustard	plastid	95.78	96.1
CDY32974	Canola	plastid	95.68	95.99
CDY14376	Canola	cytosol	5.73	86.89
AT5G58550.1	Thale cress	cytosol, mitochondrion, plastid	83.68	83.68
PGSC0003DMT400051035	Potato	cytosol, mitochondrion, nucleus	4.97	64.79
VIT_06s0004g07020.t01	Wine grape	cytosol	58.05	57.93
Os03t0294700-01	Rice	cytosol	33.62	57.91
KRH30203	Soybean	plastid	57.73	57.11
KRH72722	Soybean	cytosol, plastid	57.84	57.1
KRG98245	Soybean	plastid	57.3	56.87
Solyc09g055310.2.1	Tomato	cytosol	55.14	56.04
KRH17084	Soybean	plastid	57.08	55.29
CDY29045	Canola	cytosol	54.92	54.33
CDX90635	Canola	cytosol	54.38	54.09
CDY14472	Canola	cytosol	52.54	54.0
CDX78038	Canola	cytosol	53.62	53.97
CDX91443	Canola	cytosol, plastid	53.08	53.66
CDX74897	Canola	plastid	52.76	53.57
CDX73693	Canola	cytosol	54.05	53.02
CDY07743	Canola	cytosol, plastid	53.08	52.57
GSMUA_Achr6P32850_001	Banana	mitochondrion, plastid	51.57	49.23
GSMUA_Achr8P01920_001	Banana	cytosol, mitochondrion, plastid	50.38	48.29
TraesCS4B01G192300.1	Wheat	cytosol, plastid	49.95	47.88
TraesCS4D01G193600.2	Wheat	cytosol, plastid	49.84	47.82
TraesCS4A01G111500.1	Wheat	cytosol, plastid	49.84	47.62
HORVU4Hr1G055900.5	Barley	cytosol, plastid	49.62	47.47
EER95025	Sorghum	plastid	49.19	47.1
Zm00001d028769_P004	Maize	plastid	49.19	47.0
Zm00001d047721_P001	Maize	plastid	48.97	46.65
CDY66290	Canola	cytosol, plastid	41.19	45.79
CDY18003	Canola	cytosol	40.76	45.31

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.5.1.3	Gene3D:3.30.710.10	UniProt:A0A078JHQ0	InterPro:BTB/POZ_dom	EnsemblPlants:CDY66209
ProteinID:CDY66209	ProteinID:CDY66209.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00052306001	InterPro:IPR000210	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13181
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44203	PANTHER:PTHR44203:SF1	InterPro:SKP1/BTB/POZ_sf	SMART:SM00028
SMART:SM00225	SUPFAM:SSF48452	SUPFAM:SSF54695	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EF2A8C	SEG:seg	:	:	:	:

Description

BnaCnng49980DBnaCnng49980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHQ0]

Coordinates

chrLK035143:+:10435..13933

Molecular Weight (calculated)

105347.0 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.286

Length

925 amino acids

Sequence
(BLAST)

001: MRNLKLFERF KSTQIHAFTS SQDSPSTSTN GRSSSSSSPR MNFLRHPKST SKSFSRSLLP HGFPTTDLLE PPLDSNLKPI DLVESLSNLY RRIESSSESE
101: TSMLYLEQYT VLRSLGDAKL LRRCLLNARR HAVDVPCKVV LSAWLRFERR EHELVGVESM DCNGFAIECP KSSLSRGCDL NLVNEHCKCC EEEEIKVSIA
201: DEFSGLDEES DFTFCVGLEK AKCVRSRIAS LSRPFEAMLY GSFIESRASE IDFSENGISV EAMVALNIYS RLKRVDLFRV ETVFELLGLA TKFCCDDLKS
301: ACESRLASSI TDLDKALTFV DYALEERAEL LLSACLQVFL RELPQSLHSS KVMRLFCSSE AKEGLSFLGS ECLFTLYYFL SQVGMEERLA TEAMLVLLER
401: TREFARANWQ KAVALHQMGC VLFERKDYKA AQFHFRLASS LGHVYSLAGV SRTEYKQGKT YSAYKLMNYL ISKHKPRGWM YQERSLYNVG DDEKLKDLAT
501: ATELDPTQTF PYKYRAVMKF ERKQVKEAFE EVDRLIQFKL TPDCLELRAW LFLAVGDKES CLRDIRAVLT LEPKYVVFGG RMRNDLVEAL TAQCSEVDCW
601: VKLYDRWSAV DDVGSLGVVH QMLQNDPSKN FLRFRQSLLL LRLNCQGAAM RCLRMAWNLA ASEAERLVYE GWLLYDMSYV DEALTKAEKA ISIQRSFEAF
701: FLKAYVLAEK NLDPDESSCV AQVLEEALKC PSDGLRKGQA LNNLGSIYID CSMLDQAETA YKNALEIQHT RAHQGLARVY FLKNQRKEAC EEMTKLINKA
801: FSKAAAYEKR SEYCEREKAK EDLDMATTLD PLRTYPYRYR AAVLMDDQRE TEAVEELSKA IAFRPELQTL HLRAAFHEAT GKLSLAAQDC EAALCLDPNH
901: TETLHLYSRS KDQASSIDNT IVGLD

Best Arabidopsis Sequence Match ( AT5G58550.1 )
(BLAST)

001: MRNLKLFERF KSTQVHAFTT QDSPSTSSNG SPRMMKFLGH PKSKSRSLLP HGFPTTDLLE PPLDSYLKPI DLVESLSNLY RRIESSSESE ASMLYLEQYA
101: VLRSLGDAKL LRRCLLNARR HAIDVPCKVV FSAWLRFFRR EHELVGVESM DCNGLASECP KTSLTHGCDL NVDDEGCECS TVCEDEFGSD DVKISKADEF
201: SGLDEVSDIS FCVGSEKAKC VRSRIAALSR PFEAMLYGSF VESTTSEIDF SENGISIEAM LALNIYSRIK RVDLFRVETV FELLQLASKF CCDDLKSECE
301: ARLAASVTDL DKALTFVEYA LEERTTLLLS ACLQVFLREL PQSLHNPKVM RFFCSSEAKE QLAFLGSECV FLLYYFLSQV GMEEKLTTDT MLILLERTRE
401: FARTNWQKAL SLHQMGCVLF ERKDYKAAQF HFRLASSLGH VYSLAGVSRT EYKQGKRYSA YRLMNFLISN HKPHGWMYQE RSLYNVGVEK LKDLATATEL
501: DPTLSFPYKY RAVMKFEQKQ IKEAFQEIDR LIQFKLSPEC LELRAWLYLA TGDRESCLRD LRAVLSLEPN YVVFGGKMRD DLVEALTAQC IEVESEADCW
601: VRLFDRWSAV DDVASLAVVH QMLQNDPSKN FLRFRQSLLL LRLNCQGAAM RCLRMAWNLA TSEAERLVYE GWLLYDMGYV EETLTKAEEA ISIQRSFEAF
701: FLKAYALADK NLDADEISCV VQVLEEALKC PSDGLRKGQA LNNLGSIYIN LGMLDQAETA YKNAIEIKHT RARQGLARVY FLKNQRKEAC EEMTKLIEKS
801: CSKAAAYEKR SEYCEREKAK EDLDMATTLD PLRTYPYRYR AAVLMDDQRE TEAVEELSKA IAFRPELQTL HLRAAFHEAT GNLSLATQDC EAALCLDPNH
901: TETLHLYSRS KDQASSIDNT IFGLD

Arabidopsis Description

EOL2ETO1-like 2 [Source:TAIR;Acc:AT5G58550]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.