Factsheet for GSMUA_Achr6P32850_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P04420_001
GSMUA_Achr1P14280_001
GSMUA_Achr2P08600_001
GSMUA_Achr3P25830_001
GSMUA_Achr4P01340_001
GSMUA_Achr5P08880_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58550.1	GSMUA_Achr1P04420_001	AT5G65800.1	15118728
AT5G58550.1	GSMUA_Achr1P14280_001	AT5G65800.1	15118728
AT5G58550.1	GSMUA_Achr2P08600_001	AT5G65800.1	15118728
AT5G58550.1	GSMUA_Achr3P25830_001	AT5G65800.1	15118728
AT5G58550.1	GSMUA_Achr4P01340_001	AT5G65800.1	15118728
AT5G58550.1	GSMUA_Achr5P08880_001	AT5G65800.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P01920_001	Banana	cytosol, mitochondrion, plastid	82.15	82.49
Os03t0294700-01	Rice	cytosol	42.41	76.54
CDY14376	Canola	cytosol	4.54	72.13
Bra022691.1-P	Field mustard	cytosol	4.54	72.13
HORVU4Hr1G055900.5	Barley	cytosol, plastid	65.63	65.77
TraesCS4A01G111500.1	Wheat	cytosol, plastid	65.63	65.7
TraesCS4D01G193600.2	Wheat	cytosol, plastid	65.33	65.66
TraesCS4B01G192300.1	Wheat	cytosol, plastid	65.12	65.39
VIT_08s0058g00260.t01	Wine grape	cytosol	62.54	63.72
EER95025	Sorghum	plastid	63.47	63.66
Zm00001d028769_P004	Maize	plastid	63.26	63.33
CDX90635	Canola	cytosol	60.68	63.23
CDY29045	Canola	cytosol	60.89	63.1
Bra012838.1-P	Field mustard	cytosol	59.86	62.91
CDX78038	Canola	cytosol	59.65	62.89
KRH76003	Soybean	cytosol	61.82	62.79
Bra006875.1-P	Field mustard	cytosol	60.78	62.59
CDX91443	Canola	cytosol, plastid	59.03	62.51
KRH65637	Soybean	cytosol	61.82	62.4
CDX73693	Canola	cytosol	60.58	62.25
Zm00001d047721_P001	Maize	plastid	62.33	62.2
Bra005123.1-P	Field mustard	plastid	58.51	62.1
CDX74897	Canola	plastid	58.31	62.02
CDY14472	Canola	cytosol	57.59	62.0
AT3G51770.2	Thale cress	cytosol	61.2	61.84
VIT_06s0004g07020.t01	Wine grape	cytosol	58.41	61.06
Bra000048.1-P	Field mustard	cytosol, plastid	58.31	60.49
PGSC0003DMT400068499	Potato	cytosol, plastid	58.62	60.49
Solyc10g076450.1.1	Tomato	cytosol	59.24	60.48
PGSC0003DMT400041081	Potato	cytosol	59.03	60.4
CDY07743	Canola	cytosol, plastid	58.2	60.39
Solyc09g055310.2.1	Tomato	cytosol	56.14	59.78
KRH72722	Soybean	cytosol, plastid	55.31	57.2
KRG98245	Soybean	plastid	54.28	56.44
PGSC0003DMT400051035	Potato	cytosol, mitochondrion, nucleus	4.13	56.34
KRH30203	Soybean	plastid	54.28	56.26
KRH17084	Soybean	plastid	54.7	55.5
CDY32974	Canola	plastid	49.43	51.95
CDY66209	Canola	plastid	49.23	51.57
AT5G58550.1	Thale cress	cytosol, mitochondrion, plastid	49.12	51.46
Bra002638.1-P	Field mustard	plastid	48.71	51.19
GSMUA_Achr4P28450_001	Banana	cytosol	46.65	51.07
GSMUA_Achr4P21140_001	Banana	cytosol	46.65	50.62

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.5.1.3	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G32850_001	EnsemblPlants:GSMUA_Achr6P32850_001	EnsemblPlants:GSMUA_Achr6T32850_001	InterPro:IPR000210
InterPro:IPR011990	InterPro:IPR019734	UniProt:M0TC79	PFAM:PF13181	PANTHER:PTHR44203	PANTHER:PTHR44203:SF3
InterPro:SKP1/BTB/POZ_sf	SMART:SM00028	SMART:SM00225	SUPFAM:SSF48452	SUPFAM:SSF54695	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000294BBC7	SEG:seg	:	:	:

Description

Ethylene-overproduction-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G32850_001]

Coordinates

chr6:-:32072728..32078672

Molecular Weight (calculated)

107872.0 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.317

Length

969 amino acids

Sequence
(BLAST)

001: MQKNHLLTTL RSLKLIDGCK GTQVYAVNQS ASNGNAPASS SSSSSVGEKP LLRHVASLRS KSIQGGNNGG GRNHYTPSLL PDSLLPFGLP SADHIDPPVD
101: PFLRHVDPVS ALSDSFRRLS STTKAEADAG AGDERLLLLC DLHLEQLSLF RPVADPKLLR RSLRSARLHA PNAHHRVVLS AWLRFERRED QLLPSPSPLS
201: SCSPTSPALE CPRAALLSPS SSSDLLCPCR HPPPDPSPSS SASVPAPRRH GQEEIEDADV WFCIGDDEVP CVRSSIAALS KPLSTLLYGG FAEAQRERIS
301: FSHNGISVRG MKAVDVFSRT GRLDEFPPDT VLELLAFANK FCCEGLKSAC DAKMASLVRN LDDALLLVEY GLEETAYLLV AACLQVFLRE LPRSLSDPDI
401: TRLLCTQEGR ERLEAADHAS FLLYHFLSQV AMEEDMKSNT TVMLLERLVE CATPGWQKQL SLHQLGCVML ERGEYKDAQR WFEEAASEGH VYSRIGVARA
501: KFKKGHKYSA YKLASSLIDD FEPVGWMYQE RSLYCNGKEK MSDLRVATEL DPTLAYPYKY RAIALMENGK VGAAIAEVNK IIGFKVSTDC LELRAWFCLA
601: LEDYEGAVQD TRALMTLDPS YLMFHGKLHG DQLIEILQQH GKQWDMADCW MQLYDRWSAV DDIGSLAVVH QMLAKEPANS SLRFRQSLLL LRLNCQKAAM
701: NSLRLARNHS IHDHERLVYE GWILYDTGHR DEALAKAEES ISVQRSFEAF FLKAYALADS NLDPTSSSYV IQLLEQANSC ASDNLRKGQA HNNMGSIYVD
801: CDMLDEAAEC YLKALGIKHT RAHQGLARVY YLKNQKKAAY DEMTKLIEKA KNNASAYEKR SEYCDRDMAK SDLNMATKLD PLRTYPYRYR AAVLMDDNKE
901: EEAIAELSQA IAFKPDLQLL HLRAAFYDSM GDTASTLRDC EAALCLDPSH CDSMDLHNKA LGRAGPPST

Best Arabidopsis Sequence Match ( AT3G51770.2 )
(BLAST)

001: MQHNLFTTMR SLKLAEGCKG TQVYALNPSA PTPPPPPGNS SSGGGGGGGS GGGTGGVGDK LLQHLSDHLR VNSVRSKSSR TYPPPTQPNA VVSPEFLLPC
101: GLPVTDLLEP QIDPCLKFVD LVEKMAQVYR RIENCSQFEK SGAYLEQCAI FRGISDPKLF RRSLRSSRQH AVDVHAKVVL ASWLRFERRE DELIGTTSMD
201: CCGRNLECPK ATLVSGYDPE SVYDPCVCSG ASRSEMMNED ECSTSQEVDY DMSFCIGDEE VRCVRYKIAS LSRPFKAMLY GGFREMKRAT INFTQNGISV
301: EGMRAAEIFS RTNRLDNFPP NVVLELLKLA NRFCCDELKS ACDSHLAHLV NSLDEAMLLI EYGLEEAAYL LVAACLQVFL RELPSSMHNP NVIKIFCSAE
401: GRERLASLGH ASFTLYFFLS QIAMEDDMKS NTTVMLLERL VECAVDSWEK QLAYHQLGVV MLERKEYKDA QRWFNAAVEA GHLYSLVGVA RTKFKRDHRY
501: SAYKIINSLI SDHKATGWMH QERSLYCSGK EKLLDLDTAT EFDPTLTFPY KFRAVALVEE NQFGAAIAEL NKILGFKASP DCLEMRAWIS IGMEDYEGAL
601: KDIRALLTLE PNFMMFNWKI HGDHMVELLR PLAQQWSQAD CWMQLYDRWS SVDDIGSLAV VHHMLANDPG KSLLRFRQSL LLLRLNCQKA AMRSLRLARN
701: HSKSEHERLV YEGWILYDTG HREEALAKAE ESISIQRSFE AFFLKAYALA DSTLDPDSSN YVIQLLQEAL KCPSDGLRKG QALNNLGSVY VDCEKLDLAA
801: DCYTNALTIK HTRAHQGLAR VYHLKNQRKA AYDEMTKLIE KAQNNASAYE KRSEYCDREM AQSDLCLATQ LDPLRTYPYR YRAAVLMDDH KESEAIDELS
901: RAISFKPDLQ LLHLRAAFYD SMGEGASAIK DCEAALCIDP GHADTLELYH KAREPNDQK

Arabidopsis Description

ETO1ETO1 [Source:UniProtKB/TrEMBL;Acc:A0A178VGM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.