Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g063540.1.1 | |
| Solyc02g091990.2.1 | |
| Solyc03g043890.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58550.1 | Solyc02g063540.1.1 | AT5G65800.1 | 15118728 |
| AT5G58550.1 | Solyc02g091990.2.1 | AT5G65800.1 | 15118728 |
| AT5G58550.1 | Solyc03g043890.2.1 | AT5G65800.1 | 15118728 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051035 | Potato | cytosol, mitochondrion, nucleus | 7.58 | 97.18 |
| Bra022691.1-P | Field mustard | cytosol | 4.62 | 68.85 |
| CDY14376 | Canola | cytosol | 4.62 | 68.85 |
| VIT_06s0004g07020.t01 | Wine grape | cytosol | 68.9 | 67.64 |
| Os03t0294700-01 | Rice | cytosol | 37.91 | 64.25 |
| KRH72722 | Soybean | cytosol, plastid | 62.53 | 60.73 |
| KRG98245 | Soybean | plastid | 62.09 | 60.62 |
| KRH30203 | Soybean | plastid | 62.2 | 60.53 |
| KRH17084 | Soybean | plastid | 62.53 | 59.58 |
| Solyc10g076450.1.1 | Tomato | cytosol | 59.67 | 57.22 |
| GSMUA_Achr6P32850_001 | Banana | mitochondrion, plastid | 59.78 | 56.14 |
| CDY32974 | Canola | plastid | 56.59 | 55.86 |
| AT5G58550.1 | Thale cress | cytosol, mitochondrion, plastid | 56.37 | 55.46 |
| GSMUA_Achr8P01920_001 | Banana | cytosol, mitochondrion, plastid | 58.79 | 55.44 |
| CDY66209 | Canola | plastid | 56.04 | 55.14 |
| Bra002638.1-P | Field mustard | plastid | 55.82 | 55.1 |
| HORVU4Hr1G055900.5 | Barley | cytosol, plastid | 55.71 | 52.43 |
| TraesCS4B01G192300.1 | Wheat | cytosol, plastid | 55.49 | 52.33 |
| TraesCS4D01G193600.2 | Wheat | cytosol, plastid | 55.27 | 52.18 |
| TraesCS4A01G111500.1 | Wheat | cytosol, plastid | 55.38 | 52.07 |
| Zm00001d028769_P004 | Maize | plastid | 55.27 | 51.96 |
| EER95025 | Sorghum | plastid | 55.05 | 51.86 |
| Zm00001d047721_P001 | Maize | plastid | 54.07 | 50.67 |
| Solyc09g065640.2.1 | Tomato | cytosol | 47.69 | 48.98 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.5.1.3 | Gene3D:3.30.710.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:K4CT28 | PFAM:PF13176 |
| PFAM:PF13181 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR44203 | PANTHER:PTHR44203:SF1 | InterPro:SKP1/BTB/POZ_sf |
| SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF54695 | EnsemblPlantsGene:Solyc09g055310.2 | EnsemblPlants:Solyc09g055310.2.1 | InterPro:TPR-contain_dom |
| InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI000276AF43 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr9:+:39054180..39063823
Molecular Weight (calculated)
103936.0 Da
IEP (calculated)
6.286
GRAVY (calculated)
-0.234
Length
910 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGFKLKDRC KTTQVHAYNA NPFPTISPTS SKLQYPTIDS ILSESPFLPY GLPKTHSFEP PLDLSLKSLD FVQSLAHLYR KLQMTQDFDK SLLHLEQYAL
101: LYTLGDPKLL RRCLQSARQH AVDVHSKVVL SAWLRFERRE DELVGSSPFD CIGRVLECPK TALLHGYDPK SVFDHCQSHG PLQPPPNQIS DANNFLTSEN
201: DGGIVHFCIQ NQEVNCIRGR IAALSAPLKS MLYGDFIESE KETIDFTHIG ISVDGMRAVD SFSRTRRFDS YPPNILLELL SFANRFCCEE LKSASDSYLA
301: SLVSDIDEAF ILIDYALDER APLLVASCLQ LMLRELPGYL YNPKVLCTFC SSEAREKLAT VGQASFLLYY FLSQVAIEDN MMSKVTLMLL ERLKECATET
401: WQKALSMHQL GCVLLERKDY KEAQHYFEMA IEAGHVYSVV GVARTKFKQG QRFLAFELIN GIISEYTPTG WMYQERSLYS LGKQKILDVN DASRLDPALP
501: FPYKYRAIVM VEEDQVEAAI VEINRIIGFK VSPDCLELRA WCFIALEDYQ SAIRDIRALL TLEPNYMMFH GKMRTDHLVE LLSLHVQPWS PADCWMQLYD
601: RWSSVDDIGS LAVIHQMLIN DPGRSILRFR QSLLLLRLNC QKAAMRSLRL AWNHSTSKYE RLVYEGWILY DTGHREEALA KAEESISLQR SFEAFFLKAY
701: ALADATLDSE SSSYVIQLLE EALKCPSDGL RKGQALNNLG SIYVDCNKLD LAADCYVRAL EIKHTRAHQG LARVYHLKGD RKSAYEEMTK LIDKAQNKAS
801: AYEKRSEYCD RDMANGDLSM ASLLDPLRTY PYRYRAAVLM DDQRETEAVE ELTRAISFKP DLQMLNLRAA FHESMTDFSR ALLDSEAALC LDPNHKDTLD
901: LYSRTRLKNT
101: LYTLGDPKLL RRCLQSARQH AVDVHSKVVL SAWLRFERRE DELVGSSPFD CIGRVLECPK TALLHGYDPK SVFDHCQSHG PLQPPPNQIS DANNFLTSEN
201: DGGIVHFCIQ NQEVNCIRGR IAALSAPLKS MLYGDFIESE KETIDFTHIG ISVDGMRAVD SFSRTRRFDS YPPNILLELL SFANRFCCEE LKSASDSYLA
301: SLVSDIDEAF ILIDYALDER APLLVASCLQ LMLRELPGYL YNPKVLCTFC SSEAREKLAT VGQASFLLYY FLSQVAIEDN MMSKVTLMLL ERLKECATET
401: WQKALSMHQL GCVLLERKDY KEAQHYFEMA IEAGHVYSVV GVARTKFKQG QRFLAFELIN GIISEYTPTG WMYQERSLYS LGKQKILDVN DASRLDPALP
501: FPYKYRAIVM VEEDQVEAAI VEINRIIGFK VSPDCLELRA WCFIALEDYQ SAIRDIRALL TLEPNYMMFH GKMRTDHLVE LLSLHVQPWS PADCWMQLYD
601: RWSSVDDIGS LAVIHQMLIN DPGRSILRFR QSLLLLRLNC QKAAMRSLRL AWNHSTSKYE RLVYEGWILY DTGHREEALA KAEESISLQR SFEAFFLKAY
701: ALADATLDSE SSSYVIQLLE EALKCPSDGL RKGQALNNLG SIYVDCNKLD LAADCYVRAL EIKHTRAHQG LARVYHLKGD RKSAYEEMTK LIDKAQNKAS
801: AYEKRSEYCD RDMANGDLSM ASLLDPLRTY PYRYRAAVLM DDQRETEAVE ELTRAISFKP DLQMLNLRAA FHESMTDFSR ALLDSEAALC LDPNHKDTLD
901: LYSRTRLKNT
001: MRSLKLAEGC KGTQVYALNP SAPTPPPPPG NSSSGGGGGG GSGGGTGGVG DKLLQHLSDH LRVNSVRSKS SRTYPPPTQP NAVVSPEFLL PCGLPVTDLL
101: EPQIDPCLKF VDLVEKMAQV YRRIENCSQF EKSGAYLEQC AIFRGISDPK LFRRSLRSSR QHAVDVHAKV VLASWLRFER REDELIGTTS MDCCGRNLEC
201: PKATLVSGYD PESVYDPCVC SGASRSEMMN EDECSTSQEV DYDMSFCIGD EEVRCVRYKI ASLSRPFKAM LYGGFREMKR ATINFTQNGI SVEGMRAAEI
301: FSRTNRLDNF PPNVVLELLK LANRFCCDEL KSACDSHLAH LVNSLDEAML LIEYGLEEAA YLLVAACLQV FLRELPSSMH NPNVIKIFCS AEGRERLASL
401: GHASFTLYFF LSQIAMEDDM KSNTTVMLLE RLVECAVDSW EKQLAYHQLG VVMLERKEYK DAQRWFNAAV EAGHLYSLVG VARTKFKRDH RYSAYKIINS
501: LISDHKATGW MHQERSLYCS GKEKLLDLDT ATEFDPTLTF PYKFRAVALV EENQFGAAIA ELNKILGFKA SPDCLEMRAW ISIGMEDYEG ALKDIRALLT
601: LEPNFMMFNW KIHGDHMVEL LRPLAQQWSQ ADCWMQLYDR WSSVDDIGSL AVVHHMLAND PGKSLLRFRQ SLLLLRLNCQ KAAMRSLRLA RNHSKSEHER
701: LVYEGWILYD TGHREEALAK AEESISIQRS FEAFFLKAYA LADSTLDPDS SNYVIQLLQE ALKCPSDGLR KGQALNNLGS VYVDCEKLDL AADCYTNALT
801: IKHTRAHQGL ARVYHLKNQR KAAYDEMTKL IEKAQNNASA YEKRSEYCDR EMAQSDLCLA TQLDPLRTYP YRYRAAVLMD DHKESEAIDE LSRAISFKPD
901: LQLLHLRAAF YDSMGEGASA IKDCEAALCI DPGHADTLEL YHKAREPNDQ K
101: EPQIDPCLKF VDLVEKMAQV YRRIENCSQF EKSGAYLEQC AIFRGISDPK LFRRSLRSSR QHAVDVHAKV VLASWLRFER REDELIGTTS MDCCGRNLEC
201: PKATLVSGYD PESVYDPCVC SGASRSEMMN EDECSTSQEV DYDMSFCIGD EEVRCVRYKI ASLSRPFKAM LYGGFREMKR ATINFTQNGI SVEGMRAAEI
301: FSRTNRLDNF PPNVVLELLK LANRFCCDEL KSACDSHLAH LVNSLDEAML LIEYGLEEAA YLLVAACLQV FLRELPSSMH NPNVIKIFCS AEGRERLASL
401: GHASFTLYFF LSQIAMEDDM KSNTTVMLLE RLVECAVDSW EKQLAYHQLG VVMLERKEYK DAQRWFNAAV EAGHLYSLVG VARTKFKRDH RYSAYKIINS
501: LISDHKATGW MHQERSLYCS GKEKLLDLDT ATEFDPTLTF PYKFRAVALV EENQFGAAIA ELNKILGFKA SPDCLEMRAW ISIGMEDYEG ALKDIRALLT
601: LEPNFMMFNW KIHGDHMVEL LRPLAQQWSQ ADCWMQLYDR WSSVDDIGSL AVVHHMLAND PGKSLLRFRQ SLLLLRLNCQ KAAMRSLRLA RNHSKSEHER
701: LVYEGWILYD TGHREEALAK AEESISIQRS FEAFFLKAYA LADSTLDPDS SNYVIQLLQE ALKCPSDGLR KGQALNNLGS VYVDCEKLDL AADCYTNALT
801: IKHTRAHQGL ARVYHLKNQR KAAYDEMTKL IEKAQNNASA YEKRSEYCDR EMAQSDLCLA TQLDPLRTYP YRYRAAVLMD DHKESEAIDE LSRAISFKPD
901: LQLLHLRAAF YDSMGEGASA IKDCEAALCI DPGHADTLEL YHKAREPNDQ K
Arabidopsis Description
ETO1ETO1 [Source:UniProtKB/TrEMBL;Acc:A0A178VGM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.