CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04373
KRH28319
KRH58165
KRH77167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58550.1	KRH04373	AT5G65800.1	15118728
AT5G58550.1	KRH28319	AT5G65800.1	15118728
AT5G58550.1	KRH58165	AT5G65800.1	15118728
AT5G58550.1	KRH77167	AT5G65800.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17084	Soybean	plastid	92.96	91.2
KRG98245	Soybean	plastid	76.73	77.15
KRH30203	Soybean	plastid	76.63	76.79
Bra022691.1-P	Field mustard	cytosol	4.8	73.77
CDY14376	Canola	cytosol	4.8	73.77
PGSC0003DMT400051035	Potato	cytosol, mitochondrion, nucleus	5.34	70.42
VIT_06s0004g07020.t01	Wine grape	cytosol	66.49	67.21
Solyc09g055310.2.1	Tomato	cytosol	60.73	62.53
Os03t0294700-01	Rice	cytosol	35.43	61.83
KRH76003	Soybean	cytosol	59.98	58.91
CDY32974	Canola	plastid	57.31	58.24
KRH65637	Soybean	cytosol	59.66	58.23
CDY66209	Canola	plastid	57.1	57.84
Bra002638.1-P	Field mustard	plastid	56.67	57.59
AT5G58550.1	Thale cress	cytosol, mitochondrion, plastid	56.35	57.08
GSMUA_Achr6P32850_001	Banana	mitochondrion, plastid	57.2	55.31
GSMUA_Achr8P01920_001	Banana	cytosol, mitochondrion, plastid	56.03	54.4
TraesCS4B01G192300.1	Wheat	cytosol, plastid	53.15	51.61
HORVU4Hr1G055900.5	Barley	cytosol, plastid	53.26	51.6
TraesCS4D01G193600.2	Wheat	cytosol, plastid	52.83	51.35
EER95025	Sorghum	plastid	52.72	51.14
Zm00001d028769_P004	Maize	plastid	52.83	51.14
TraesCS4A01G111500.1	Wheat	cytosol, plastid	52.72	51.03
Zm00001d047721_P001	Maize	plastid	51.76	49.95
KRH71376	Soybean	cytosol	45.68	48.31
KRH67265	Soybean	cytosol	45.68	48.2
KRH32058	Soybean	cytosol	44.82	47.35
KRG95578	Soybean	cytosol	45.78	45.25

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100800568	MapMan:11.5.1.3	Gene3D:3.30.710.10	EMBL:ACUP02001237	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G229400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JHF7	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH72722	ProteinID:KRH72722	ProteinID:KRH72722.1	PFAM:PF13181
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44203	PANTHER:PTHR44203:SF1	InterPro:SKP1/BTB/POZ_sf	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF54695	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002337867
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:41688132..41693178

Molecular Weight (calculated)

105865.0 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.265

Length

937 amino acids

Sequence
(BLAST)

001: MRDLKLVERF KSTQVHALNS EATSRRNKAT VGARARAITI RSLVSKSKSN TTTTSTTTTT SAVANLVVPL QLPSADTLEP SIEPHLKPIN LVEALSELYQ
101: RLECCCLQSE KKTSLCVEQF TLLRSLGDQK LLRRCLRTAR QNAEDVLSKV VLSAWLRFER REDELEGVPS MDCGGGGGSC VLECPKVNLV KGFSSPCSIN
201: DRCQCPQGTK EEATSNEESV FLCLPDEEKK DVSFCIGIEE IDCVRWRIAA LSDPFKAMLY GGFAESKMRK IDFSKNGICS KGMRAVEFYS RAKRLDFFCA
301: MTVLELLSFA NRFCCEEMKA ACDAHLASTV GSADDALTLI DYGLEERAPL LVASCLQVLL RELPNSLHNS KVMNVFCSSE GRKRLAMVGY DSFLLYYFLS
401: QVAMEEIMVS KTTVMLLERL GECAAERWQK ALAFHQLGCV LVERKEYKEA QHSFEVAAEA GHVYSVAGVA RTKYKQGQPY SAYKLISSLI FEHKPAGWMY
501: QERALYNMGR EKSFDLDVAT ELDPSLSFPY KYRALAKVEE KQIKDGILEL DKIIGFKLSP DCLELRARMF IALKDYDSAI RDIRALLTLE PNYVTSNEKI
601: SGKYLVHLLS HVVQQKSQAE CWMQLYEQWS SVDDVGSLAI IHQMLENEPG KSLLEFRQSL LLLRLNCQKA AMRSLRMARN HSSSMQERLI YEGWILYDTG
701: YRDEALARAD RSITIQRSFE AYFLKAYVLA DTSMDPESAS YVIELLEEAL KCPSDGLRKG QALNNLGSIY VDCGKLDLAK ACYENALAIR HTRAHQGLAR
801: VYHQKNQRKA AYDEMTKLIE KAESNASAYE KRSEYCDREM AKVDLNVATQ LDPLRTYPYR YRAAVMMDEQ KESEAVDELT KAINFKPDLQ MLHLRAAFYE
901: AIGDLSSALQ DCQAALCLDP NHTDTLDLYQ RARKLSF

Best Arabidopsis Sequence Match ( AT3G51770.1 )
(BLAST)

001: MRSLKLAEGC KGTQVYALNP SAPTPPPPPG NSSSGGGGGG GSGGGTGGVG DKLLQHLSDH LRVNSVRSKS SRTYPPPTQP NAVVSPEFLL PCGLPVTDLL
101: EPQIDPCLKF VDLVEKMAQV YRRIENCSQF EKSGAYLEQC AIFRGISDPK LFRRSLRSSR QHAVDVHAKV VLASWLRFER REDELIGTTS MDCCGRNLEC
201: PKATLVSGYD PESVYDPCVC SGASRSEMMN EDECSTSQEV DYDMSFCIGD EEVRCVRYKI ASLSRPFKAM LYGGFREMKR ATINFTQNGI SVEGMRAAEI
301: FSRTNRLDNF PPNVVLELLK LANRFCCDEL KSACDSHLAH LVNSLDEAML LIEYGLEEAA YLLVAACLQV FLRELPSSMH NPNVIKIFCS AEGRERLASL
401: GHASFTLYFF LSQIAMEDDM KSNTTVMLLE RLVECAVDSW EKQLAYHQLG VVMLERKEYK DAQRWFNAAV EAGHLYSLVG VARTKFKRDH RYSAYKIINS
501: LISDHKATGW MHQERSLYCS GKEKLLDLDT ATEFDPTLTF PYKFRAVALV EENQFGAAIA ELNKILGFKA SPDCLEMRAW ISIGMEDYEG ALKDIRALLT
601: LEPNFMMFNW KIHGDHMVEL LRPLAQQWSQ ADCWMQLYDR WSSVDDIGSL AVVHHMLAND PGKSLLRFRQ SLLLLRLNCQ KAAMRSLRLA RNHSKSEHER
701: LVYEGWILYD TGHREEALAK AEESISIQRS FEAFFLKAYA LADSTLDPDS SNYVIQLLQE ALKCPSDGLR KGQALNNLGS VYVDCEKLDL AADCYTNALT
801: IKHTRAHQGL ARVYHLKNQR KAAYDEMTKL IEKAQNNASA YEKRSEYCDR EMAQSDLCLA TQLDPLRTYP YRYRAAVLMD DHKESEAIDE LSRAISFKPD
901: LQLLHLRAAF YDSMGEGASA IKDCEAALCI DPGHADTLEL YHKAREPNDQ K

Arabidopsis Description

ETO1ETO1 [Source:UniProtKB/TrEMBL;Acc:A0A178VGM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.