Factsheet for TraesCS4B01G192300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G256500.1
TraesCS4B01G058200.1
TraesCS4D01G058200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58550.1	TraesCS4A01G256500.1	AT5G65800.1	15118728
AT5G58550.1	TraesCS4B01G058200.1	AT5G65800.1	15118728
AT5G58550.1	TraesCS4D01G058200.1	AT5G65800.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G193600.2	Wheat	cytosol, plastid	96.37	96.47
TraesCS4A01G111500.1	Wheat	cytosol, plastid	94.51	94.21
HORVU4Hr1G055900.5	Barley	cytosol, plastid	92.85	92.66
Os03t0294700-01	Rice	cytosol	45.8	82.31
EER95025	Sorghum	plastid	76.37	76.29
Zm00001d028769_P004	Maize	plastid	76.27	76.03
Zm00001d047721_P001	Maize	plastid	75.34	74.87
GSMUA_Achr6P32850_001	Banana	mitochondrion, plastid	65.39	65.12
GSMUA_Achr8P01920_001	Banana	cytosol, mitochondrion, plastid	64.46	64.46
CDY14376	Canola	cytosol	4.04	63.93
Bra022691.1-P	Field mustard	cytosol	4.04	63.93
PGSC0003DMT400051035	Potato	cytosol, mitochondrion, nucleus	4.35	59.15
CDX78038	Canola	cytosol	55.34	58.11
VIT_08s0058g00260.t01	Wine grape	cytosol	56.48	57.31
CDX91443	Canola	cytosol, plastid	54.3	57.27
CDX90635	Canola	cytosol	55.13	57.2
CDY29045	Canola	cytosol	55.23	57.01
CDX74897	Canola	plastid	53.68	56.86
Bra005123.1-P	Field mustard	plastid	53.68	56.74
AT3G51770.2	Thale cress	cytosol	56.37	56.73
Bra006875.1-P	Field mustard	cytosol	55.23	56.64
Bra012838.1-P	Field mustard	cytosol	54.09	56.62
CDX73693	Canola	cytosol	55.03	56.31
KRH65637	Soybean	cytosol	55.96	56.25
KRH76003	Soybean	cytosol	55.54	56.18
PGSC0003DMT400041081	Potato	cytosol	54.92	55.97
Solyc10g076450.1.1	Tomato	cytosol	54.92	55.85
Bra000048.1-P	Field mustard	cytosol, plastid	53.89	55.67
CDY07743	Canola	cytosol, plastid	53.89	55.67
VIT_06s0004g07020.t01	Wine grape	cytosol	53.37	55.56
CDY14472	Canola	cytosol	51.81	55.56
Solyc09g055310.2.1	Tomato	cytosol	52.33	55.49
PGSC0003DMT400068499	Potato	cytosol, plastid	53.89	55.38
KRH72722	Soybean	cytosol, plastid	51.61	53.15
KRG98245	Soybean	plastid	51.09	52.9
KRH30203	Soybean	plastid	50.78	52.41
KRH17084	Soybean	plastid	50.67	51.2
CDY32974	Canola	plastid	48.08	50.33
CDY66209	Canola	plastid	47.88	49.95
Bra002638.1-P	Field mustard	plastid	47.15	49.35
AT5G58550.1	Thale cress	cytosol, mitochondrion, plastid	46.74	48.76
TraesCS2B01G592500.1	Wheat	cytosol	43.32	47.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.5.1.3	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR011990	InterPro:IPR019734	PFAM:PF13181
PFscan:PS50005	PANTHER:PTHR44203	PANTHER:PTHR44203:SF3	InterPro:SKP1/BTB/POZ_sf	SMART:SM00028	SMART:SM00225
SUPFAM:SSF48452	SUPFAM:SSF54695	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS4B01G192300	EnsemblPlants:TraesCS4B01G192300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:415124669..415128287

Molecular Weight (calculated)

107766.0 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.294

Length

965 amino acids

Sequence
(BLAST)

001: MTNNFLTTIR SLKLIEGCKA AQIYPFNSAA STSGGSGDGG GGAKLLPLPP PRSPSLMSAS LCYPHAPATS GAFSSDSTLP CGLPAAAALE PALDACLRPV
101: DHVSALAASF RRMSSADRKG DDLCDVYLEQ HALFHGLGDP RLLRRALRAA RVHATDSHRR VVLAAWLRHE RREDEFDPMP PPLDPCGPTT PLLECPRSAV
201: FAMESSGVDP VCPCRRTPPP PPRPPRLRRD TILRRNASIA FDESEEEDDD DETNDLWFVI GQEEVACERS CIAALAKPLN TLLYGGFAEA RRDHIDFSRD
301: GISARGMRAV AAYSRHGRLD DFPPDTILEL LAFANKFCCD GLKVACDNKL ASMVRGVDEA LSLIDLGLEE AAHLLVATCL QAFLRELPKS LSNPEVARLL
401: CSPEGRERLD AAGNASFALY YFLSYVAMEE DMRSNTTVML LERLWECAEL PWHKQLALHQ LGCVMLERGE FKDAQEWFEE AVAEGHVYSL AGVARAKFKC
501: GHKYMAYKLM NRVVTDYDPA GWMYQERAVY CVGKEKMADL RTATQLDPTL TYPYKYRAAA LLEEDKMERA LEEIDKVLSF RMATDCLELR AWFYLVAGDF
601: EAAVRDVRAI LTLDPTYMMF HGKMHGEQLI ELLRGQLQQR DMADCWMQLY DRWSGVDDIG SLAVVQQMLA REPGNSSLRF RQSLLLLRLN CQKAAMRSLR
701: LARNSSIHDH ERLVYEGWIL YDTGHREEAL EKAEQSLSLQ RSFEAFFLKA YALGDSSLDV EPALSVVQLL EHANSCASDN LRKGQAYNNM GSIYVDCDLL
801: DEATECYSIA LSIKHTRAHQ GLARVHFLKN RKKAAFDEMT SLLKIAKNSA SAYEKRSEYA ERDAAKSDLN MATLLDPTRT YPYRYRAAVL MDENKEEEAI
901: GELTQALAFK PDLQLLHLRA AFQESMGDSA STLRDCEAAL CMDPEHGDTL ELYNKASAKA EQSES

Best Arabidopsis Sequence Match ( AT3G51770.2 )
(BLAST)

001: MQHNLFTTMR SLKLAEGCKG TQVYALNPSA PTPPPPPGNS SSGGGGGGGS GGGTGGVGDK LLQHLSDHLR VNSVRSKSSR TYPPPTQPNA VVSPEFLLPC
101: GLPVTDLLEP QIDPCLKFVD LVEKMAQVYR RIENCSQFEK SGAYLEQCAI FRGISDPKLF RRSLRSSRQH AVDVHAKVVL ASWLRFERRE DELIGTTSMD
201: CCGRNLECPK ATLVSGYDPE SVYDPCVCSG ASRSEMMNED ECSTSQEVDY DMSFCIGDEE VRCVRYKIAS LSRPFKAMLY GGFREMKRAT INFTQNGISV
301: EGMRAAEIFS RTNRLDNFPP NVVLELLKLA NRFCCDELKS ACDSHLAHLV NSLDEAMLLI EYGLEEAAYL LVAACLQVFL RELPSSMHNP NVIKIFCSAE
401: GRERLASLGH ASFTLYFFLS QIAMEDDMKS NTTVMLLERL VECAVDSWEK QLAYHQLGVV MLERKEYKDA QRWFNAAVEA GHLYSLVGVA RTKFKRDHRY
501: SAYKIINSLI SDHKATGWMH QERSLYCSGK EKLLDLDTAT EFDPTLTFPY KFRAVALVEE NQFGAAIAEL NKILGFKASP DCLEMRAWIS IGMEDYEGAL
601: KDIRALLTLE PNFMMFNWKI HGDHMVELLR PLAQQWSQAD CWMQLYDRWS SVDDIGSLAV VHHMLANDPG KSLLRFRQSL LLLRLNCQKA AMRSLRLARN
701: HSKSEHERLV YEGWILYDTG HREEALAKAE ESISIQRSFE AFFLKAYALA DSTLDPDSSN YVIQLLQEAL KCPSDGLRKG QALNNLGSVY VDCEKLDLAA
801: DCYTNALTIK HTRAHQGLAR VYHLKNQRKA AYDEMTKLIE KAQNNASAYE KRSEYCDREM AQSDLCLATQ LDPLRTYPYR YRAAVLMDDH KESEAIDELS
901: RAISFKPDLQ LLHLRAAFYD SMGEGASAIK DCEAALCIDP GHADTLELYH KAREPNDQK

Arabidopsis Description

ETO1ETO1 [Source:UniProtKB/TrEMBL;Acc:A0A178VGM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.