Factsheet for TraesCS4A01G111500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G256500.1
TraesCS4B01G058200.1
TraesCS4D01G058200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58550.1	TraesCS4A01G256500.1	AT5G65800.1	15118728
AT5G58550.1	TraesCS4B01G058200.1	AT5G65800.1	15118728
AT5G58550.1	TraesCS4D01G058200.1	AT5G65800.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G193600.2	Wheat	cytosol, plastid	95.56	95.95
TraesCS4B01G192300.1	Wheat	cytosol, plastid	94.21	94.51
HORVU4Hr1G055900.5	Barley	cytosol, plastid	92.05	92.14
Os03t0294700-01	Rice	cytosol	45.97	82.87
EER95025	Sorghum	plastid	76.24	76.4
Zm00001d028769_P004	Maize	plastid	75.52	75.52
Zm00001d047721_P001	Maize	plastid	75.52	75.28
GSMUA_Achr6P32850_001	Banana	mitochondrion, plastid	65.7	65.63
GSMUA_Achr8P01920_001	Banana	cytosol, mitochondrion, plastid	64.88	65.08
CDY14376	Canola	cytosol	4.03	63.93
Bra022691.1-P	Field mustard	cytosol	4.03	63.93
CDX78038	Canola	cytosol	54.86	57.78
VIT_08s0058g00260.t01	Wine grape	cytosol	56.3	57.31
CDX91443	Canola	cytosol, plastid	54.13	57.27
CDX90635	Canola	cytosol	54.96	57.2
CDY29045	Canola	cytosol	54.96	56.9
CDX74897	Canola	plastid	53.51	56.86
Bra006875.1-P	Field mustard	cytosol	55.27	56.85
KRH76003	Soybean	cytosol	55.99	56.81
Bra005123.1-P	Field mustard	plastid	53.51	56.74
KRH65637	Soybean	cytosol	56.2	56.67
Bra012838.1-P	Field mustard	cytosol	53.93	56.62
AT3G51770.2	Thale cress	cytosol	55.99	56.52
CDX73693	Canola	cytosol	54.96	56.42
PGSC0003DMT400051035	Potato	cytosol, mitochondrion, nucleus	4.13	56.34
Solyc10g076450.1.1	Tomato	cytosol	55.17	56.27
PGSC0003DMT400041081	Potato	cytosol	54.96	56.18
PGSC0003DMT400068499	Potato	cytosol, plastid	54.03	55.7
Bra000048.1-P	Field mustard	cytosol, plastid	53.72	55.67
CDY07743	Canola	cytosol, plastid	53.72	55.67
VIT_06s0004g07020.t01	Wine grape	cytosol	53.31	55.66
CDY14472	Canola	cytosol	51.55	55.44
Solyc09g055310.2.1	Tomato	cytosol	52.07	55.38
KRH72722	Soybean	cytosol, plastid	51.03	52.72
KRG98245	Soybean	plastid	50.52	52.47
KRH30203	Soybean	plastid	50.1	51.87
KRH17084	Soybean	plastid	50.1	50.79
CDY32974	Canola	plastid	48.04	50.43
CDY66209	Canola	plastid	47.62	49.84
Bra002638.1-P	Field mustard	plastid	47.0	49.35
AT5G58550.1	Thale cress	cytosol, mitochondrion, plastid	46.28	48.43
TraesCS2A01G591300.1	Wheat	cytosol	43.08	46.38

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.5.1.3	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR011990	InterPro:IPR019734	PFAM:PF13181	PFscan:PS50005
PANTHER:PTHR44203	PANTHER:PTHR44203:SF3	InterPro:SKP1/BTB/POZ_sf	SMART:SM00028	SMART:SM00225	SUPFAM:SSF48452
SUPFAM:SSF54695	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS4A01G111500	EnsemblPlants:TraesCS4A01G111500.1	SEG:seg

Description

No Description!

Coordinates

chr4A:+:136611606..136615251

Molecular Weight (calculated)

108158.0 Da

IEP (calculated)

5.559

GRAVY (calculated)

-0.303

Length

968 amino acids

Sequence
(BLAST)

001: MTNNFLTTIR SLKLIEGCKA AQIYPFNSAA STSGGSGDGG GGAKLLPLPP PRSVSLMSAS LCYPHAPATS GAFSSDSTLP CGLPAAAALE PALDACLRPV
101: DHVSALAASF RRMSSAERKG DDLCDVYLEQ HALFHALGDP RLLRRALRAA RVHATDSHRR VVLAAWLRHE RREDEFDPMP PPLDPCGPTT PLLECPRSAV
201: FATESSGVDP VCPCRRTPPP PPRPPRLRRD TILRRNASIA FDESEEDDDD EEDETNDLWF VIGQEEVACE RSCIAALAKP LNTLLYGGFA EARRDHIDFS
301: RDGISARGMR AVAAYSRHGR LDDFPPDTIL ELLAFANKFC CDGLKVACDN KLASMVRGVD EALSLIDLGL EEAAHLLVAT CLQAFLRELP KSLSHPEVAR
401: LLCSPEGRER LDAAGNASFA LYYFLSYVAM EEDMRSNTTV MLLERLWECA ELPWHKQLAL HQLGCVMLER GEFKDAQEWF EEAVAEGHVY SLAGVARAKF
501: KCGHKYMAYK LMNRVVTDYD PAGWMYQERA VYCVGKEKMA DLRTATQLDP TLTYPYKYRA ASLLEEDKME RALEEIDKVL SFRMATDCLE LRAWFYLVAG
601: DFEAAVRDVR AILTLDPTYM MFHGKMHGEQ LIELLRGQVQ QRDMADCWLQ LYDRWSGVDD IGSLAVVQQM LAREPGNSSL RFRQSLLLLR LNCQKAAMRS
701: LRLARNSSMH DHERLVYEGW ILYDTGHRDE ALEKAEQSLS LQRSFEAFFL KAYALGDSSL DVESALSVVQ LLEHANSCAS DNLRKGQAYN NMGSIYVDCD
801: LLDEATECYS IALSIKHTRA HQGLARVHFL KNRKKAAFDE MTSLLKIAKN SASAYEKRSE YAERDAAKSD LNMATLLDPT RTYPYRYRAA VLMDENKEEE
901: AIGELTQALA FKPDLQLLHL RAAFQDSMGD SASTLRDCEA ALCMHPQHGD TLELYNKASS KADHQSES

Best Arabidopsis Sequence Match ( AT3G51770.2 )
(BLAST)

001: MQHNLFTTMR SLKLAEGCKG TQVYALNPSA PTPPPPPGNS SSGGGGGGGS GGGTGGVGDK LLQHLSDHLR VNSVRSKSSR TYPPPTQPNA VVSPEFLLPC
101: GLPVTDLLEP QIDPCLKFVD LVEKMAQVYR RIENCSQFEK SGAYLEQCAI FRGISDPKLF RRSLRSSRQH AVDVHAKVVL ASWLRFERRE DELIGTTSMD
201: CCGRNLECPK ATLVSGYDPE SVYDPCVCSG ASRSEMMNED ECSTSQEVDY DMSFCIGDEE VRCVRYKIAS LSRPFKAMLY GGFREMKRAT INFTQNGISV
301: EGMRAAEIFS RTNRLDNFPP NVVLELLKLA NRFCCDELKS ACDSHLAHLV NSLDEAMLLI EYGLEEAAYL LVAACLQVFL RELPSSMHNP NVIKIFCSAE
401: GRERLASLGH ASFTLYFFLS QIAMEDDMKS NTTVMLLERL VECAVDSWEK QLAYHQLGVV MLERKEYKDA QRWFNAAVEA GHLYSLVGVA RTKFKRDHRY
501: SAYKIINSLI SDHKATGWMH QERSLYCSGK EKLLDLDTAT EFDPTLTFPY KFRAVALVEE NQFGAAIAEL NKILGFKASP DCLEMRAWIS IGMEDYEGAL
601: KDIRALLTLE PNFMMFNWKI HGDHMVELLR PLAQQWSQAD CWMQLYDRWS SVDDIGSLAV VHHMLANDPG KSLLRFRQSL LLLRLNCQKA AMRSLRLARN
701: HSKSEHERLV YEGWILYDTG HREEALAKAE ESISIQRSFE AFFLKAYALA DSTLDPDSSN YVIQLLQEAL KCPSDGLRKG QALNNLGSVY VDCEKLDLAA
801: DCYTNALTIK HTRAHQGLAR VYHLKNQRKA AYDEMTKLIE KAQNNASAYE KRSEYCDREM AQSDLCLATQ LDPLRTYPYR YRAAVLMDDH KESEAIDELS
901: RAISFKPDLQ LLHLRAAFYD SMGEGASAIK DCEAALCIDP GHADTLELYH KAREPNDQK

Arabidopsis Description

ETO1ETO1 [Source:UniProtKB/TrEMBL;Acc:A0A178VGM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.