Factsheet for VIT_08s0058g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076450.1.1	Tomato	cytosol	73.29	73.45
PGSC0003DMT400068499	Potato	cytosol, plastid	72.45	73.38
KRH76003	Soybean	cytosol	73.61	73.38
AT3G51770.2	Thale cress	cytosol	73.92	73.31
KRH65637	Soybean	cytosol	73.82	73.12
PGSC0003DMT400041081	Potato	cytosol	72.56	72.86
CDX91443	Canola	cytosol, plastid	69.82	72.57
Bra006875.1-P	Field mustard	cytosol	71.71	72.48
Bra005123.1-P	Field mustard	plastid	69.4	72.29
CDX74897	Canola	plastid	69.09	72.12
CDX73693	Canola	cytosol	71.5	72.11
CDX78038	Canola	cytosol	69.61	72.03
CDY29045	Canola	cytosol	70.77	71.98
CDX90635	Canola	cytosol	70.14	71.72
Bra012838.1-P	Field mustard	cytosol	69.3	71.48
CDY14472	Canola	cytosol	67.09	70.89
Bra000048.1-P	Field mustard	cytosol, plastid	69.09	70.34
CDY07743	Canola	cytosol, plastid	68.98	70.24
Os03t0294700-01	Rice	cytosol	39.12	69.27
VIT_06s0004g07020.t01	Wine grape	cytosol	66.46	68.18
GSMUA_Achr6P32850_001	Banana	mitochondrion, plastid	63.72	62.54
GSMUA_Achr8P01920_001	Banana	cytosol, mitochondrion, plastid	61.3	60.41
TraesCS4B01G192300.1	Wheat	cytosol, plastid	57.31	56.48
HORVU4Hr1G055900.5	Barley	cytosol, plastid	57.31	56.36
TraesCS4D01G193600.2	Wheat	cytosol, plastid	57.1	56.33
EER95025	Sorghum	plastid	57.2	56.31
TraesCS4A01G111500.1	Wheat	cytosol, plastid	57.31	56.3
Zm00001d028769_P004	Maize	plastid	57.1	56.09
Zm00001d047721_P001	Maize	plastid	56.57	55.41
VIT_00s0179g00100.t01	Wine grape	cytosol	49.42	53.05
VIT_00s0233g00080.t01	Wine grape	cytosol	12.72	50.63
VIT_18s0089g00540.t01	Wine grape	cytosol	5.68	42.52

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100264225	wikigene:100264225	MapMan:11.5.1.3	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
ProteinID:CCB44826	ProteinID:CCB44826.1	ncoils:Coil	UniProt:F6GXU6	EMBL:FN594967	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR011990	InterPro:IPR019734	EntrezGene:LOC100264225
wikigene:LOC100264225	PANTHER:PTHR44203	PANTHER:PTHR44203:SF3	InterPro:SKP1/BTB/POZ_sf	SMART:SM00028	SMART:SM00225
SUPFAM:SSF48452	SUPFAM:SSF54695	TIGR:TC52978	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001983CFD
ArrayExpress:VIT_08s0058g00260	EnsemblPlantsGene:VIT_08s0058g00260	EnsemblPlants:VIT_08s0058g00260.t01	unigene:Vvi.11978	RefSeq:XP_002269998	RefSeq:XP_002269998.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:9059797..9067735

Molecular Weight (calculated)

107428.0 Da

IEP (calculated)

6.161

GRAVY (calculated)

-0.296

Length

951 amino acids

Sequence
(BLAST)

001: MQHNIFTTMR SLKLIDGCKG TQIYALNPSN TTITGGGGGG GGVGVGGGGG VGEKLLHHLH DHLGVNTARY KSNQNCQAVV DTLLPHGLPK ADLLEPQIEP
101: YLKSVNFVET LADVYRRTAN CLQFEKSEAY LEQCAIFRGL PDPKLFRRSL RLARQHAVDA HSKVVISAWL KYERREDELI GTSAMECCGR NVECPKAALV
201: SGYNPESVYD PCVCSRTPQE DVDDEGSVED EECSTSEEDG DMSFCIGEEE VRCVRYNIAG LSRPFKAMLY GSFVESRRER INFSHNGISA EGMRAAEIFS
301: RTKKVDSFDP KIVLELLSLA NKFCCEEMKS ACDVHLASLV GDIESAMLFI EYGLEETAYL LVAACLQVFL RELPNSLNNP NVVKFFCSVE ARKRLAVVGH
401: ASFLLFYFLS QIAMEDDMKS NTTVMLLERL GECATSSWQK QLVNHLLGCV MLERNEYKDA QHWFQASAEA GHVYSLVGFA RAKYRRGHKF SAYKQMNSLI
501: SDYTPVGWMY QERSLYCLGK EKMMDLNTAT ELDPTLSFPY MYRAVLMVED KKIGAAISEI NKIIGFKVSA ECLALRAWFS IAMEDYDGAL RDVRALLTLE
601: PNYMMFNGKM PADQLVELLR HHAQQWNQAD CWMQLYDRWS SVDDIGSLAV VHQMLANDPG RSLLWFRQSL LLLRLNSQKA AMRSLRLARN YSSSEHERLV
701: YEGWILYDTG HREEALAKAE ESISIQRSFE AFFLKAYALA DSSLDSESSL YVIELLEEAL KCPSDGLRKG QALNNLGSVY VDCENLDRAR VCYINALTIK
801: HTRAHQGLAR VYHLKNQRKH AYDEMTKLIE KARNNASAYE KRSEYCDRDM AKNDLSMATQ LDPLRTYPYR YRAAVLMDDH KEAEAIAELT KAITFKPDLQ
901: LLHLRAAFHD SMGDFVSTLR DSEAALCLDP SHADTLELCN KAQERCNEQQ K

Best Arabidopsis Sequence Match ( AT3G51770.2 )
(BLAST)

001: MQHNLFTTMR SLKLAEGCKG TQVYALNPSA PTPPPPPGNS SSGGGGGGGS GGGTGGVGDK LLQHLSDHLR VNSVRSKSSR TYPPPTQPNA VVSPEFLLPC
101: GLPVTDLLEP QIDPCLKFVD LVEKMAQVYR RIENCSQFEK SGAYLEQCAI FRGISDPKLF RRSLRSSRQH AVDVHAKVVL ASWLRFERRE DELIGTTSMD
201: CCGRNLECPK ATLVSGYDPE SVYDPCVCSG ASRSEMMNED ECSTSQEVDY DMSFCIGDEE VRCVRYKIAS LSRPFKAMLY GGFREMKRAT INFTQNGISV
301: EGMRAAEIFS RTNRLDNFPP NVVLELLKLA NRFCCDELKS ACDSHLAHLV NSLDEAMLLI EYGLEEAAYL LVAACLQVFL RELPSSMHNP NVIKIFCSAE
401: GRERLASLGH ASFTLYFFLS QIAMEDDMKS NTTVMLLERL VECAVDSWEK QLAYHQLGVV MLERKEYKDA QRWFNAAVEA GHLYSLVGVA RTKFKRDHRY
501: SAYKIINSLI SDHKATGWMH QERSLYCSGK EKLLDLDTAT EFDPTLTFPY KFRAVALVEE NQFGAAIAEL NKILGFKASP DCLEMRAWIS IGMEDYEGAL
601: KDIRALLTLE PNFMMFNWKI HGDHMVELLR PLAQQWSQAD CWMQLYDRWS SVDDIGSLAV VHHMLANDPG KSLLRFRQSL LLLRLNCQKA AMRSLRLARN
701: HSKSEHERLV YEGWILYDTG HREEALAKAE ESISIQRSFE AFFLKAYALA DSTLDPDSSN YVIQLLQEAL KCPSDGLRKG QALNNLGSVY VDCEKLDLAA
801: DCYTNALTIK HTRAHQGLAR VYHLKNQRKA AYDEMTKLIE KAQNNASAYE KRSEYCDREM AQSDLCLATQ LDPLRTYPYR YRAAVLMDDH KESEAIDELS
901: RAISFKPDLQ LLHLRAAFYD SMGEGASAIK DCEAALCIDP GHADTLELYH KAREPNDQK

Arabidopsis Description

ETO1ETO1 [Source:UniProtKB/TrEMBL;Acc:A0A178VGM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.