Factsheet for VIT_00s0179g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0840g00010.t01
VIT_00s1437g00010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02680.1	VIT_00s0840g00010.t01	AT5G65800.1	15118728
AT4G02680.1	VIT_00s1437g00010.t01	AT5G65800.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71376	Soybean	cytosol	79.35	79.35
KRH67265	Soybean	cytosol	79.35	79.17
KRH32058	Soybean	cytosol	78.44	78.35
GSMUA_Achr4P21140_001	Banana	cytosol	78.78	78.16
GSMUA_Achr4P28450_001	Banana	cytosol	77.43	77.51
Bra000868.1-P	Field mustard	cytosol	71.22	75.93
CDY66290	Canola	cytosol, plastid	71.11	75.72
CDY18003	Canola	cytosol	70.43	75.0
AT4G02680.1	Thale cress	cytosol	75.17	75.0
KRG95578	Soybean	cytosol	79.23	74.05
Os11t0585900-01	Rice	cytosol	70.77	73.16
EES08750	Sorghum	cytosol	73.02	72.7
TraesCS2D01G562900.1	Wheat	cytosol	71.78	71.62
VIT_00s0233g00080.t01	Wine grape	cytosol	19.3	71.55
TraesCS2B01G592500.1	Wheat	cytosol	71.67	71.51
Os07t0178100-01	Rice	cytosol	71.33	71.33
HORVU2Hr1G119180.1	Barley	cytosol	71.33	71.17
EER95939	Sorghum	cytosol	70.99	70.83
Zm00001d018939_P001	Maize	cytosol	70.43	70.27
TraesCS2A01G591300.1	Wheat	cytosol	71.11	70.08
Zm00001d052974_P002	Maize	cytosol, extracellular, nucleus	69.53	67.92
VIT_18s0089g00540.t01	Wine grape	cytosol	9.48	66.14
Zm00001d007522_P023	Maize	cytosol	66.14	65.04
VIT_06s0004g07020.t01	Wine grape	cytosol	52.93	50.59
VIT_08s0058g00260.t01	Wine grape	cytosol	53.05	49.42

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100266551	wikigene:100266551	MapMan:11.5.1.3	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
ProteinID:CBI25039	ProteinID:CBI25039.3	ncoils:Coil	UniProt:D7T3F8	EMBL:FN595511	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010364	InterPro:IPR000210	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100266551
wikigene:LOC100266551	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44203	PANTHER:PTHR44203:SF2
InterPro:SKP1/BTB/POZ_sf	SMART:SM00028	SMART:SM00225	SUPFAM:SSF48452	SUPFAM:SSF54695	TIGR:TC58812
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001BE24AB	ArrayExpress:VIT_00s0179g00100	EnsemblPlantsGene:VIT_00s0179g00100
EnsemblPlants:VIT_00s0179g00100.t01	RefSeq:XP_002280519	RefSeq:XP_002280519.2	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:7363833..7369416

Molecular Weight (calculated)

100181.0 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.195

Length

886 amino acids

Sequence
(BLAST)

001: MKNLFPSESC KETQLNAFNP QSWLQVERGK LSKFSSQSSS SIESLIKVPE PPILPFFKPV DYVEVLAQIH EELESCPPQE RSNLYLLQFQ VFRGLGEVKL
101: MRRSLRSAWQ RASTVQEKLI FGAWLKYEKQ GEELIADLLA SCGKCAQEFG PIDIASQLPA DSNTSSNEAV VMNGNEILKT VIFRIGDEKI VCDRQKIAGL
201: SAPFHAMLNG CFTESLQEDI DLSENNISPS GMRAIHEFCM TGSLGEVPPD LLLEILIFGN KFCCERLKDA CGRKLASLVS SRDDAVELID YALEENSPVL
301: AASCLQVFLH ELPDCLNDNR VLEILSDANR QQRSIMVGPA SFSLYCFLSE VAMALDPRSD TTACFLERLV ESAESSRQRL LACHQLGCVR LLRKEYDEAE
401: QLFEAALNAG HVYSVAGLVR LGYLKGHKLW SYDKLSSVIS SFTPLGWMYQ ERSLYCEGDK RWEDLEKATE LDPTLTYPYM YRAASLMRKQ NVQAALAEIN
501: QVLGFKLALE CLELRFCFYL AVENYEAAFC DVQAILTLSP DYRMFEGRVA ASQLRMLVRE HVESWTTADC WLQLYDRWSS VDDIGSLSVI YQMLESDAAK
601: GVLYFRQSLL LLRLNCPEAA MRSLQLARQH ASNEHERLVY EGWILYDTGH CEEGLRKAEE SIGLKRSFEA FFLKAYALAD SSQDPSCSST VVSLLEDALK
701: CPSDRLRKGQ ALNNLGSVYV DCGKLELAAD CYINALKIRH TRAHQGLARV HFLKNDKTAA YVEMTKLIEK ARNNASAYEK RSEYCERELT KADLEMVTRL
801: DPLRVYPYRY RAAVLMDSHK EKEAIAELSR AIAFKADLHL LHLRAAFHEH IGDVLGALRD CRAALSVDPN HQEMLELHSR VNSHEP

Best Arabidopsis Sequence Match ( AT4G02680.1 )
(BLAST)

001: MRTFYPSDSC KESQLDSLNP QSWLQVERGK LSSSASSSAP LCRESFIKVP EPQILPHYKP LDYVEVLAQI HEELDTCPLQ ERSILYLLQY QVFRGLGETK
101: LRRRSLQSAW QEATTVHEKV VFGSWLRYEK QGEEVITDLL SSCGKYSEEF VPLDIASYFP ATTASSPEAA SVKTNRSVSK NVVFKIGEEK IACQRRKIAS
201: LSAPFHAMLY GNFTESLLDE IDMSENHVSS SAMRVVRDFS VVGVLIGVSK NLLLEVLVFA NKFCCERLKD ACDRELASLI SSMECAIELM DFALEENSPI
301: LASSCLQVFL YEMPDSLNDE RVVEVLTRVN RSQVSTMAGK APFSLYSCLS EVSMCIDPRS DRTLGFLEKL VDFAENDRQQ VLGFHRLGCM RLLRKEYREA
401: EEAFETAFNL GHVYSATGLA RLGYIQGHRL WAYEKLSSVI SSVSPPLGWM YQERSFYCEG DKKLEDLEKA TELDPTLTYP YMYRAVTRMS KQNAKAALEE
501: INRILGFKLA LECLEIRFCL YLGMDDYEAA LRDIQAALTL CPDYRMFDGK VAGRQLQTLV YEHVENWTTA DCWMQLYEKW SNVDDIGSLS VIYQMLESDA
601: CKGVLYFRQS LLLLRLNCPE AAMRSLQLAR EHASSDHERL VYEGWILYDT GHCEEGLQKA KESIGIKRSF EAYFLQAYAL AESSLDPSSS STVVSLLEDA
701: LKCPSDRLRK GQALNNLGSV YVDCEKLDLA ADCYINALKV RHTRAHQGLA RVHFLRNDKA AAYEEMTRLI EKAQNNASAY EKRSEYCDRE LAKSDLEMVT
801: RLDPLRVYPY RYRAAVLMDS RKEREAITEL SRAIAFKADL HLLHLRAAFH EHIGDVTSAL RDCRAALSVD PNHQEMLELH SRVNSHEP

Arabidopsis Description

EOL1EOL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V4A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.