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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000868.1-P Field mustard cytosol 86.15 92.06
CDY66290 Canola cytosol, plastid 85.81 91.59
CDY18003 Canola cytosol 85.47 91.23
VIT_00s0179g00100.t01 Wine grape cytosol 75.0 75.17
Solyc09g065640.2.1 Tomato cytosol 73.54 73.7
PGSC0003DMT400049804 Potato cytosol 73.54 73.7
KRH67265 Soybean cytosol 70.5 70.5
GSMUA_Achr4P21140_001 Banana cytosol 70.83 70.44
GSMUA_Achr4P28450_001 Banana cytosol 69.48 69.72
KRH32058 Soybean cytosol 69.26 69.33
KRH71376 Soybean cytosol 69.14 69.3
Os11t0585900-01 Rice cytosol 66.1 68.49
Os07t0178100-01 Rice cytosol 67.68 67.83
EES08750 Sorghum cytosol 67.57 67.42
EER95939 Sorghum cytosol 66.78 66.78
TraesCS2B01G592500.1 Wheat cytosol 66.22 66.22
TraesCS2D01G562900.1 Wheat cytosol 66.22 66.22
KRG95578 Soybean cytosol 70.61 66.14
HORVU2Hr1G119180.1 Barley cytosol 66.1 66.1
Zm00001d018939_P001 Maize cytosol 66.1 66.1
TraesCS2A01G591300.1 Wheat cytosol 65.54 64.74
Zm00001d052974_P002 Maize cytosol, extracellular, nucleus 64.98 63.62
Zm00001d007522_P023 Maize cytosol 61.04 60.16
AT3G51770.2 Thale cress cytosol 51.13 47.34
AT5G58550.1 Thale cress cytosol, mitochondrion, plastid 45.27 43.46
Protein Annotations
Gene3D:1.25.40.10MapMan:11.5.1.3Gene3D:3.30.710.10EntrezGene:828205UniProt:A0A178V4A7ProteinID:AAC78270.1
ProteinID:AEE82213.1EMBL:AK229195ArrayExpress:AT4G02680EnsemblPlantsGene:AT4G02680RefSeq:AT4G02680TAIR:AT4G02680
RefSeq:AT4G02680-TAIR-GEnsemblPlants:AT4G02680.1TAIR:AT4G02680.1EMBL:AY572792Unigene:At.3897ProteinID:CAB77753.1
ncoils:CoilSymbol:EOL1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0010364
GO:GO:0016567GO:GO:0019538InterPro:IPR011990InterPro:IPR019734RefSeq:NP_192177.1ProteinID:OAP00634.1
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281
PANTHER:PTHR44203PANTHER:PTHR44203:SF2UniProt:Q9ZQX6InterPro:SKP1/BTB/POZ_sfSMART:SM00028SUPFAM:SSF48452
SUPFAM:SSF54695InterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatUniParc:UPI00000A75FBSEG:seg:
Description
EOL1EOL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V4A7]
Coordinates
chr4:-:1180923..1185012
Molecular Weight (calculated)
101049.0 Da
IEP (calculated)
5.591
GRAVY (calculated)
-0.263
Length
888 amino acids
Sequence
(BLAST)
001: MRTFYPSDSC KESQLDSLNP QSWLQVERGK LSSSASSSAP LCRESFIKVP EPQILPHYKP LDYVEVLAQI HEELDTCPLQ ERSILYLLQY QVFRGLGETK
101: LRRRSLQSAW QEATTVHEKV VFGSWLRYEK QGEEVITDLL SSCGKYSEEF VPLDIASYFP ATTASSPEAA SVKTNRSVSK NVVFKIGEEK IACQRRKIAS
201: LSAPFHAMLY GNFTESLLDE IDMSENHVSS SAMRVVRDFS VVGVLIGVSK NLLLEVLVFA NKFCCERLKD ACDRELASLI SSMECAIELM DFALEENSPI
301: LASSCLQVFL YEMPDSLNDE RVVEVLTRVN RSQVSTMAGK APFSLYSCLS EVSMCIDPRS DRTLGFLEKL VDFAENDRQQ VLGFHRLGCM RLLRKEYREA
401: EEAFETAFNL GHVYSATGLA RLGYIQGHRL WAYEKLSSVI SSVSPPLGWM YQERSFYCEG DKKLEDLEKA TELDPTLTYP YMYRAVTRMS KQNAKAALEE
501: INRILGFKLA LECLEIRFCL YLGMDDYEAA LRDIQAALTL CPDYRMFDGK VAGRQLQTLV YEHVENWTTA DCWMQLYEKW SNVDDIGSLS VIYQMLESDA
601: CKGVLYFRQS LLLLRLNCPE AAMRSLQLAR EHASSDHERL VYEGWILYDT GHCEEGLQKA KESIGIKRSF EAYFLQAYAL AESSLDPSSS STVVSLLEDA
701: LKCPSDRLRK GQALNNLGSV YVDCEKLDLA ADCYINALKV RHTRAHQGLA RVHFLRNDKA AAYEEMTRLI EKAQNNASAY EKRSEYCDRE LAKSDLEMVT
801: RLDPLRVYPY RYRAAVLMDS RKEREAITEL SRAIAFKADL HLLHLRAAFH EHIGDVTSAL RDCRAALSVD PNHQEMLELH SRVNSHEP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.