Factsheet for PGSC0003DMT400049804

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008587
PGSC0003DMT400008605
PGSC0003DMT400013977
PGSC0003DMT400055203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02680.1	PGSC0003DMT400008587	AT5G65800.1	15118728
AT4G02680.1	PGSC0003DMT400008605	AT5G65800.1	15118728
AT4G02680.1	PGSC0003DMT400013977	AT5G65800.1	15118728
AT4G02680.1	PGSC0003DMT400055203	AT5G65800.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065640.2.1	Tomato	cytosol	98.42	98.42
Bra000868.1-P	Field mustard	cytosol	69.75	74.37
GSMUA_Achr4P21140_001	Banana	cytosol	74.49	73.91
CDY18003	Canola	cytosol	69.3	73.8
KRH71376	Soybean	cytosol	73.7	73.7
CDY66290	Canola	cytosol, plastid	69.19	73.68
AT4G02680.1	Thale cress	cytosol	73.7	73.54
GSMUA_Achr4P28450_001	Banana	cytosol	73.02	73.11
KRH67265	Soybean	cytosol	73.25	73.09
KRH32058	Soybean	cytosol	73.02	72.94
EES08750	Sorghum	cytosol	71.22	70.9
Os11t0585900-01	Rice	cytosol	68.51	70.83
Os07t0178100-01	Rice	cytosol	70.54	70.54
EER95939	Sorghum	cytosol	69.98	69.82
Zm00001d018939_P001	Maize	cytosol	69.53	69.37
TraesCS2B01G592500.1	Wheat	cytosol	69.41	69.26
TraesCS2D01G562900.1	Wheat	cytosol	69.41	69.26
HORVU2Hr1G119180.1	Barley	cytosol	69.19	69.03
KRG95578	Soybean	cytosol	73.14	68.35
TraesCS2A01G591300.1	Wheat	cytosol	68.96	67.96
VIT_00s0233g00080.t01	Wine grape	cytosol	17.95	66.53
Zm00001d052974_P002	Maize	cytosol, extracellular, nucleus	67.49	65.93
VIT_18s0089g00540.t01	Wine grape	cytosol	9.26	64.57
Zm00001d007522_P023	Maize	cytosol	64.45	63.37
PGSC0003DMT400051035	Potato	cytosol, mitochondrion, nucleus	4.18	52.11
PGSC0003DMT400041081	Potato	cytosol	49.44	46.25
PGSC0003DMT400068499	Potato	cytosol, plastid	48.31	45.58

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102600157	MapMan:11.5.1.3	Gene3D:3.30.710.10	ProteinID:ABF00091	ProteinID:ABF00091.1
InterPro:BTB/POZ_dom	ncoils:Coil	EMBL:DQ423201	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010364	InterPro:IPR000210
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1BPC6	PFAM:PF13374	EnsemblPlantsGene:PGSC0003DMG400019345
PGSC:PGSC0003DMG400019345	EnsemblPlants:PGSC0003DMT400049804	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44203	PANTHER:PTHR44203:SF2
InterPro:SKP1/BTB/POZ_sf	SMART:SM00028	SMART:SM00225	SUPFAM:SSF48452	SUPFAM:SSF54695	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000295EF60	RefSeq:XP_006349718.1	SEG:seg	:

Description

Ethylene overproducer-like 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400019345]

Coordinates

chr9:+:48245208..48251906

Molecular Weight (calculated)

100630.0 Da

IEP (calculated)

5.748

GRAVY (calculated)

-0.208

Length

886 amino acids

Sequence
(BLAST)

001: MRTFFPSESC KETHLKSINP QSWLQVERGK LAKFSSESAS SIDSLIKVPE PPILPFFKPV DYVQVLAKIH EELESCSPQE RSNLYLLQFQ VFKGLGEVKL
101: MRRSLRSAWS KASTVYEKLV FGAWLKYEKQ DEELISDLLS SCGKCAKEFG AIDIASEMPA YKKLSPHGVI TTNEDSCPRT VSFRVADEKI VCDRQKIASL
201: SAPFHTMLNG CFTESFCEEI DLSENNISPV AMRVINEFSS TGLLNEVSPD LLLEILVFAN KFCCESLKDA CDRKLASLIS CRQDALELLE CALEENSPVL
301: AASCLQVFLR ELPDSLKDSQ VVELLSNTTR QQRSIMIGPA SFSLYCLLSE VSMNLDPRSD ESVHFLRTLV DSAETSQQKM VAYHRLGCVK FLRKELDEAE
401: QLFEAAFNLG HTYSVIGLAR LGQIRGHKRW AYEKLCSVIS SSIPLGWMYQ ESSLYCEGEK RWDDLEKATE LDPTLTYPYM YRAASLMRKQ NAQAALSEIN
501: RILGFKLALE CLELRFCFYL TLEDYQLAIC DIQAILTLCP DYRVFEGRVA ALQLRTLLRE HVENWTEADC WLQLYDRWSS VDDIGSLSVI YQMLESDAAK
601: GVLYFRQSLL LLRLNCPDAA MRSLQLARQH SSSEHECLVY EGWILYDTGH CEEGLQKAEE SISIKRSFEA FFLKAYALAD SSLDASCSST VITLLEDALR
701: CPSDRLRKGQ ALNNLGSVYV DCGKLDAAAD CYINALKIRH TRAHQGLARV HFLRNDKVAA YDEMTKLIEK AKNNASAYEK RSEYCDRDRT KADLEMVTRL
801: DPLRVYPYRY RAAVLMDNHK DKEAIEELSR AIAFKADLHL LHLRAAFHEH IGDVMGALRD CRAALSVDPK HQEMLELHSR VNSQEP

Best Arabidopsis Sequence Match ( AT4G02680.1 )
(BLAST)

001: MRTFYPSDSC KESQLDSLNP QSWLQVERGK LSSSASSSAP LCRESFIKVP EPQILPHYKP LDYVEVLAQI HEELDTCPLQ ERSILYLLQY QVFRGLGETK
101: LRRRSLQSAW QEATTVHEKV VFGSWLRYEK QGEEVITDLL SSCGKYSEEF VPLDIASYFP ATTASSPEAA SVKTNRSVSK NVVFKIGEEK IACQRRKIAS
201: LSAPFHAMLY GNFTESLLDE IDMSENHVSS SAMRVVRDFS VVGVLIGVSK NLLLEVLVFA NKFCCERLKD ACDRELASLI SSMECAIELM DFALEENSPI
301: LASSCLQVFL YEMPDSLNDE RVVEVLTRVN RSQVSTMAGK APFSLYSCLS EVSMCIDPRS DRTLGFLEKL VDFAENDRQQ VLGFHRLGCM RLLRKEYREA
401: EEAFETAFNL GHVYSATGLA RLGYIQGHRL WAYEKLSSVI SSVSPPLGWM YQERSFYCEG DKKLEDLEKA TELDPTLTYP YMYRAVTRMS KQNAKAALEE
501: INRILGFKLA LECLEIRFCL YLGMDDYEAA LRDIQAALTL CPDYRMFDGK VAGRQLQTLV YEHVENWTTA DCWMQLYEKW SNVDDIGSLS VIYQMLESDA
601: CKGVLYFRQS LLLLRLNCPE AAMRSLQLAR EHASSDHERL VYEGWILYDT GHCEEGLQKA KESIGIKRSF EAYFLQAYAL AESSLDPSSS STVVSLLEDA
701: LKCPSDRLRK GQALNNLGSV YVDCEKLDLA ADCYINALKV RHTRAHQGLA RVHFLRNDKA AAYEEMTRLI EKAQNNASAY EKRSEYCDRE LAKSDLEMVT
801: RLDPLRVYPY RYRAAVLMDS RKEREAITEL SRAIAFKADL HLLHLRAAFH EHIGDVTSAL RDCRAALSVD PNHQEMLELH SRVNSHEP

Arabidopsis Description

EOL1EOL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V4A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.