Factsheet for VIT_00s0233g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0089g00540.t01	Wine grape	cytosol	17.99	33.86
VIT_00s0179g00100.t01	Wine grape	cytosol	71.55	19.3
PGSC0003DMT400049804	Potato	cytosol	66.53	17.95
Solyc09g065640.2.1	Tomato	cytosol	66.53	17.95
GSMUA_Achr4P21140_001	Banana	cytosol	66.53	17.81
GSMUA_Achr4P28450_001	Banana	cytosol	65.27	17.63
Os11t0585900-01	Rice	cytosol	62.76	17.5
EES08750	Sorghum	cytosol	63.18	16.97
Os07t0178100-01	Rice	cytosol	62.34	16.82
HORVU2Hr1G119180.1	Barley	cytosol	62.34	16.78
Zm00001d018939_P001	Maize	cytosol	62.34	16.78
TraesCS2B01G592500.1	Wheat	cytosol	62.34	16.78
TraesCS2D01G562900.1	Wheat	cytosol	62.34	16.78
Zm00001d052974_P002	Maize	cytosol, extracellular, nucleus	63.6	16.76
EER95939	Sorghum	cytosol	61.92	16.67
TraesCS2A01G591300.1	Wheat	cytosol	62.34	16.57
Zm00001d007522_P023	Maize	cytosol	50.63	13.43
VIT_06s0004g07020.t01	Wine grape	cytosol	49.79	12.84
VIT_08s0058g00260.t01	Wine grape	cytosol	50.63	12.72

Protein Annotations

ArrayExpress:VIT_00s0233g00080	EMBL:FN595530	EnsemblPlants:VIT_00s0233g00080.t01	EnsemblPlantsGene:VIT_00s0233g00080	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR44203
PANTHER:PTHR44203:SF2	ProteinID:CCB50080	ProteinID:CCB50080.1	SUPFAM:SSF48452	UniParc:UPI0002109E15	UniProt:F6HCY5
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:16072554..16073773

Molecular Weight (calculated)

27554.1 Da

IEP (calculated)

10.598

GRAVY (calculated)

-0.204

Length

239 amino acids

Sequence
(BLAST)

001: MRELSLMRKQ NVQATLAEIN RVLGFKLALE YWNSGFVSIW RLRIMKRHFV IMRKGFGKQM SLFALKDALK CPSNRLRKGR TLNNPGSVYV DCGILDLAAD
101: CYINALKIQY TRAHHGVARV HFLKNDKTVA YLGTTKLIEK ARNNASACEK RFEYCERELT KAGLEMVTRL DPLRVYLCRY RAAVLMESHK EKKAIAKLSR
201: AIAFKADLHL LHLRAAFHEH IGDVSGCTTR IWRCHLCRS

Best Arabidopsis Sequence Match ( AT4G02680.1 )
(BLAST)

001: MRTFYPSDSC KESQLDSLNP QSWLQVERGK LSSSASSSAP LCRESFIKVP EPQILPHYKP LDYVEVLAQI HEELDTCPLQ ERSILYLLQY QVFRGLGETK
101: LRRRSLQSAW QEATTVHEKV VFGSWLRYEK QGEEVITDLL SSCGKYSEEF VPLDIASYFP ATTASSPEAA SVKTNRSVSK NVVFKIGEEK IACQRRKIAS
201: LSAPFHAMLY GNFTESLLDE IDMSENHVSS SAMRVVRDFS VVGVLIGVSK NLLLEVLVFA NKFCCERLKD ACDRELASLI SSMECAIELM DFALEENSPI
301: LASSCLQVFL YEMPDSLNDE RVVEVLTRVN RSQVSTMAGK APFSLYSCLS EVSMCIDPRS DRTLGFLEKL VDFAENDRQQ VLGFHRLGCM RLLRKEYREA
401: EEAFETAFNL GHVYSATGLA RLGYIQGHRL WAYEKLSSVI SSVSPPLGWM YQERSFYCEG DKKLEDLEKA TELDPTLTYP YMYRAVTRMS KQNAKAALEE
501: INRILGFKLA LECLEIRFCL YLGMDDYEAA LRDIQAALTL CPDYRMFDGK VAGRQLQTLV YEHVENWTTA DCWMQLYEKW SNVDDIGSLS VIYQMLESDA
601: CKGVLYFRQS LLLLRLNCPE AAMRSLQLAR EHASSDHERL VYEGWILYDT GHCEEGLQKA KESIGIKRSF EAYFLQAYAL AESSLDPSSS STVVSLLEDA
701: LKCPSDRLRK GQALNNLGSV YVDCEKLDLA ADCYINALKV RHTRAHQGLA RVHFLRNDKA AAYEEMTRLI EKAQNNASAY EKRSEYCDRE LAKSDLEMVT
801: RLDPLRVYPY RYRAAVLMDS RKEREAITEL SRAIAFKADL HLLHLRAAFH EHIGDVTSAL RDCRAALSVD PNHQEMLELH SRVNSHEP

Arabidopsis Description

EOL1EOL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V4A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.