Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G009800.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02680.1 | HORVU4Hr1G009800.5 | AT5G65800.1 | 15118728 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G592500.1 | Wheat | cytosol | 99.21 | 99.21 |
| TraesCS2D01G562900.1 | Wheat | cytosol | 98.99 | 98.99 |
| TraesCS2A01G591300.1 | Wheat | cytosol | 98.2 | 97.0 |
| Os11t0585900-01 | Rice | cytosol | 90.2 | 93.47 |
| EES08750 | Sorghum | cytosol | 90.54 | 90.34 |
| Zm00001d052974_P002 | Maize | cytosol, extracellular, nucleus | 87.05 | 85.23 |
| Zm00001d007522_P023 | Maize | cytosol | 82.77 | 81.58 |
| VIT_00s0179g00100.t01 | Wine grape | cytosol | 71.17 | 71.33 |
| Solyc09g065640.2.1 | Tomato | cytosol | 69.48 | 69.64 |
| PGSC0003DMT400049804 | Potato | cytosol | 69.03 | 69.19 |
| Bra000868.1-P | Field mustard | cytosol | 63.18 | 67.51 |
| CDY66290 | Canola | cytosol, plastid | 62.95 | 67.19 |
| CDY18003 | Canola | cytosol | 62.61 | 66.83 |
| KRH71376 | Soybean | cytosol | 66.44 | 66.59 |
| AT4G02680.1 | Thale cress | cytosol | 66.1 | 66.1 |
| KRH67265 | Soybean | cytosol | 65.65 | 65.65 |
| KRH32058 | Soybean | cytosol | 65.32 | 65.39 |
| VIT_00s0233g00080.t01 | Wine grape | cytosol | 16.78 | 62.34 |
| KRG95578 | Soybean | cytosol | 65.2 | 61.08 |
| VIT_18s0089g00540.t01 | Wine grape | cytosol | 7.88 | 55.12 |
| HORVU4Hr1G055900.5 | Barley | cytosol, plastid | 46.96 | 43.12 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.5.1.3 | Gene3D:3.30.710.10 | UniProt:A0A287JN69 | InterPro:BTB/POZ_dom | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010364 | EnsemblPlantsGene:HORVU2Hr1G119180 | EnsemblPlants:HORVU2Hr1G119180.1 | InterPro:IPR000210 | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF00651 | PFAM:PF13181 | PFscan:PS50005 | PFscan:PS50293 |
| PANTHER:PTHR44203 | PANTHER:PTHR44203:SF2 | InterPro:SKP1/BTB/POZ_sf | SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF54695 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI000B46A986 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr2H:-:744575128..744584352
Molecular Weight (calculated)
99925.1 Da
IEP (calculated)
6.505
GRAVY (calculated)
-0.163
Length
888 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKLFFSELT SCKETKLQSA THSWLPMDKG KLSKFTGHSS SSSSIECLMK MPEPPVLPHF KPADYVDILA QIHEELEYCP HDEKSCLYLL QFQVFRGLGE
101: AKLSRRSLQA AWEKASTIHE KLIFGAWLKY EKRGEEPISD LLGSCGKCSQ EFKLLDFVSQ ISAESHGIGF DDESDEFQGS PVVHFRIRDD MIACDRRKLA
201: ALSTPLYAML NGGFKESHLE VIDMSRNGIS PIGMRAISKF SLSGRLPYLS AEAILEMLDF ANKFCCKGLK DACEQKLASF VSSRQDAIDF MECAIELGCS
301: ILAASCLQVL LNELPECLND EQVVRIFSSA NKQQRSTMAG NASFSLYCLL GEVSMSISAI SDVTVSFLEK LVDSASDSRQ KQLSLHQLAC VRLLRKDHAE
401: AERLFNAAFT AGHVYSVVGL ARLASLRSNK HYSLNLLDSV MSSRWPLGWM YQERALYLDG DSKLENLNKA TELDPTLTYP YMFRAASLMK RQSVEAALME
501: INRILGFKLV LECLELRFCC YLALEDYRAA LCDVQAILTL APDYRMIGGR VAAKQLRTLV MENVEQWTTA DCWMQLYDRW SSVDDIGSLS VIYQMLESDA
601: AKGVLYFRQS LLLLRLNCPE AAMRSLQLAR EHAASQHERL VYEGWILYDT GHCEEGLQKA EASIAIQRSF EAFFLKAYAL ADSSLEPSTS ATVVSLLEDA
701: LRCPSDRLRK GQALNNLGSV YVDCGNLDLA AECYINALKI GHTRAHQGLA RVHFLRNNRT GAFEEMTKLI EKARSNASAY EKRSEYCDRD LTKADLQMVT
801: KLDPLRVYPY RYRAAVLMDN HKEKDAISEL TKAIAFKADL NLLHLRAAFH EHVGDISGAL RDCRAALSVD PNHQEMLELH HRVNSQEP
101: AKLSRRSLQA AWEKASTIHE KLIFGAWLKY EKRGEEPISD LLGSCGKCSQ EFKLLDFVSQ ISAESHGIGF DDESDEFQGS PVVHFRIRDD MIACDRRKLA
201: ALSTPLYAML NGGFKESHLE VIDMSRNGIS PIGMRAISKF SLSGRLPYLS AEAILEMLDF ANKFCCKGLK DACEQKLASF VSSRQDAIDF MECAIELGCS
301: ILAASCLQVL LNELPECLND EQVVRIFSSA NKQQRSTMAG NASFSLYCLL GEVSMSISAI SDVTVSFLEK LVDSASDSRQ KQLSLHQLAC VRLLRKDHAE
401: AERLFNAAFT AGHVYSVVGL ARLASLRSNK HYSLNLLDSV MSSRWPLGWM YQERALYLDG DSKLENLNKA TELDPTLTYP YMFRAASLMK RQSVEAALME
501: INRILGFKLV LECLELRFCC YLALEDYRAA LCDVQAILTL APDYRMIGGR VAAKQLRTLV MENVEQWTTA DCWMQLYDRW SSVDDIGSLS VIYQMLESDA
601: AKGVLYFRQS LLLLRLNCPE AAMRSLQLAR EHAASQHERL VYEGWILYDT GHCEEGLQKA EASIAIQRSF EAFFLKAYAL ADSSLEPSTS ATVVSLLEDA
701: LRCPSDRLRK GQALNNLGSV YVDCGNLDLA AECYINALKI GHTRAHQGLA RVHFLRNNRT GAFEEMTKLI EKARSNASAY EKRSEYCDRD LTKADLQMVT
801: KLDPLRVYPY RYRAAVLMDN HKEKDAISEL TKAIAFKADL NLLHLRAAFH EHVGDISGAL RDCRAALSVD PNHQEMLELH HRVNSQEP
001: MRTFYPSDSC KESQLDSLNP QSWLQVERGK LSSSASSSAP LCRESFIKVP EPQILPHYKP LDYVEVLAQI HEELDTCPLQ ERSILYLLQY QVFRGLGETK
101: LRRRSLQSAW QEATTVHEKV VFGSWLRYEK QGEEVITDLL SSCGKYSEEF VPLDIASYFP ATTASSPEAA SVKTNRSVSK NVVFKIGEEK IACQRRKIAS
201: LSAPFHAMLY GNFTESLLDE IDMSENHVSS SAMRVVRDFS VVGVLIGVSK NLLLEVLVFA NKFCCERLKD ACDRELASLI SSMECAIELM DFALEENSPI
301: LASSCLQVFL YEMPDSLNDE RVVEVLTRVN RSQVSTMAGK APFSLYSCLS EVSMCIDPRS DRTLGFLEKL VDFAENDRQQ VLGFHRLGCM RLLRKEYREA
401: EEAFETAFNL GHVYSATGLA RLGYIQGHRL WAYEKLSSVI SSVSPPLGWM YQERSFYCEG DKKLEDLEKA TELDPTLTYP YMYRAVTRMS KQNAKAALEE
501: INRILGFKLA LECLEIRFCL YLGMDDYEAA LRDIQAALTL CPDYRMFDGK VAGRQLQTLV YEHVENWTTA DCWMQLYEKW SNVDDIGSLS VIYQMLESDA
601: CKGVLYFRQS LLLLRLNCPE AAMRSLQLAR EHASSDHERL VYEGWILYDT GHCEEGLQKA KESIGIKRSF EAYFLQAYAL AESSLDPSSS STVVSLLEDA
701: LKCPSDRLRK GQALNNLGSV YVDCEKLDLA ADCYINALKV RHTRAHQGLA RVHFLRNDKA AAYEEMTRLI EKAQNNASAY EKRSEYCDRE LAKSDLEMVT
801: RLDPLRVYPY RYRAAVLMDS RKEREAITEL SRAIAFKADL HLLHLRAAFH EHIGDVTSAL RDCRAALSVD PNHQEMLELH SRVNSHEP
101: LRRRSLQSAW QEATTVHEKV VFGSWLRYEK QGEEVITDLL SSCGKYSEEF VPLDIASYFP ATTASSPEAA SVKTNRSVSK NVVFKIGEEK IACQRRKIAS
201: LSAPFHAMLY GNFTESLLDE IDMSENHVSS SAMRVVRDFS VVGVLIGVSK NLLLEVLVFA NKFCCERLKD ACDRELASLI SSMECAIELM DFALEENSPI
301: LASSCLQVFL YEMPDSLNDE RVVEVLTRVN RSQVSTMAGK APFSLYSCLS EVSMCIDPRS DRTLGFLEKL VDFAENDRQQ VLGFHRLGCM RLLRKEYREA
401: EEAFETAFNL GHVYSATGLA RLGYIQGHRL WAYEKLSSVI SSVSPPLGWM YQERSFYCEG DKKLEDLEKA TELDPTLTYP YMYRAVTRMS KQNAKAALEE
501: INRILGFKLA LECLEIRFCL YLGMDDYEAA LRDIQAALTL CPDYRMFDGK VAGRQLQTLV YEHVENWTTA DCWMQLYEKW SNVDDIGSLS VIYQMLESDA
601: CKGVLYFRQS LLLLRLNCPE AAMRSLQLAR EHASSDHERL VYEGWILYDT GHCEEGLQKA KESIGIKRSF EAYFLQAYAL AESSLDPSSS STVVSLLEDA
701: LKCPSDRLRK GQALNNLGSV YVDCEKLDLA ADCYINALKV RHTRAHQGLA RVHFLRNDKA AAYEEMTRLI EKAQNNASAY EKRSEYCDRE LAKSDLEMVT
801: RLDPLRVYPY RYRAAVLMDS RKEREAITEL SRAIAFKADL HLLHLRAAFH EHIGDVTSAL RDCRAALSVD PNHQEMLELH SRVNSHEP
Arabidopsis Description
EOL1EOL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V4A7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.