Factsheet for Solyc02g063540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063540.1.1
Solyc02g091990.2.1
Solyc03g043890.2.1
Solyc07g026900.1.1
Solyc08g008100.2.1
Solyc08g081540.2.1
Solyc08g081550.2.1
Solyc09g055310.2.1
Solyc09g065640.2.1
Solyc12g008740.1.1
Solyc12g056180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22810.1	Solyc02g063540.1.1	AT2G22810.1	14983000
AT2G22810.1	Solyc02g091990.2.1	AT2G22810.1	14983000
AT2G22810.1	Solyc03g043890.2.1	AT2G22810.1	14983000
AT2G22810.1	Solyc08g008100.2.1	AT4G11280.1	14983000
AT2G22810.1	Solyc08g081540.2.1	AT4G11280.1	14983000
AT2G22810.1	Solyc08g081550.2.1	AT4G11280.1	14983000
AT2G22810.1	Solyc12g056180.1.1	AT4G11280.1	14983000
AT2G22810.1	Solyc07g026900.1.1	AT4G26200.1	14983000
AT2G22810.1	Solyc12g008740.1.1	AT4G26200.1	14983000
AT2G22810.1	Solyc02g063540.1.1	AT4G37770.1	14983000
AT2G22810.1	Solyc02g091990.2.1	AT4G37770.1	14983000
AT2G22810.1	Solyc03g043890.2.1	AT4G37770.1	14983000
AT4G37770.1	Solyc02g063540.1.1	AT2G22810.1	14983000
AT4G37770.1	Solyc02g091990.2.1	AT2G22810.1	14983000
AT4G37770.1	Solyc03g043890.2.1	AT2G22810.1	14983000
AT4G37770.1	Solyc02g063540.1.1	AT4G37770.1	14983000
AT4G37770.1	Solyc02g091990.2.1	AT4G37770.1	14983000
AT4G37770.1	Solyc03g043890.2.1	AT4G37770.1	14983000
AT5G65800.1	Solyc09g065640.2.1	AT4G02680.1	15118728
AT5G65800.1	Solyc09g055310.2.1	AT5G58550.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008587	Potato	cytosol	96.13	59.22
PGSC0003DMT400008605	Potato	cytosol	82.39	55.32
CDY66472	Canola	cytosol	77.82	54.84
Solyc03g043890.2.1	Tomato	cytosol	86.97	52.44
Solyc02g091990.2.1	Tomato	cytosol	85.21	51.6
CDX75675	Canola	cytosol	78.87	49.67
VIT_00s0840g00010.t01	Wine grape	cytosol	80.99	49.04
VIT_00s1437g00010.t01	Wine grape	cytosol	80.99	49.04
Bra011784.1-P	Field mustard	cytosol	78.87	47.76
CDX69326	Canola	cytosol	78.87	47.76
AT4G37770.1	Thale cress	cytosol	78.52	47.55
Bra010611.1-P	Field mustard	cytosol	78.17	47.33
CDX81296	Canola	cytosol	72.89	47.15
CDY69462	Canola	cytosol	77.82	47.12
CDY18674	Canola	cytosol	72.54	46.92
Bra037829.1-P	Field mustard	cytosol	72.18	46.7
GSMUA_Achr3P25830_001	Banana	mitochondrion	73.59	46.55
Solyc08g008110.2.1	Tomato	cytosol, nucleus	16.55	46.53
KRH28319	Soybean	cytosol	76.76	46.28
KRH77167	Soybean	cytosol	76.41	46.17
KRH04373	Soybean	cytosol	77.11	46.11
Bra030199.1-P	Field mustard	cytosol	76.76	45.99
CDY25639	Canola	cytosol	76.41	45.78
GSMUA_Achr1P14280_001	Banana	nucleus	73.59	45.73
KRH58165	Soybean	cytosol	77.11	45.62
CDX89520	Canola	cytosol	75.7	45.36
GSMUA_Achr2P08600_001	Banana	cytosol	73.59	45.14
AT2G22810.1	Thale cress	cytosol	75.0	44.94
AT3G49700.1	Thale cress	cytosol	73.94	44.68
GSMUA_Achr5P08880_001	Banana	cytosol	73.24	44.64
AT5G65800.1	Thale cress	cytosol	73.59	44.47
Bra012924.1-P	Field mustard	cytosol	73.24	44.26
Bra017962.1-P	Field mustard	cytosol	73.24	44.26
CDY02111	Canola	cytosol	73.24	44.26
CDY23035	Canola	cytosol	72.54	44.21
CDY08163	Canola	cytosol	72.89	44.04
Bra031846.1-P	Field mustard	cytosol	72.89	44.04
CDY05953	Canola	cytosol	72.54	43.83
GSMUA_Achr4P01340_001	Banana	mitochondrion	71.13	43.72
Solyc04g077410.2.1	Tomato	cytosol	72.18	43.52
Bra024420.1-P	Field mustard	cytosol	71.48	43.19
GSMUA_Achr1P04420_001	Banana	cytosol	69.72	42.86
Zm00001d033862_P001	Maize	cytosol	71.48	41.86
TraesCS4B01G058200.1	Wheat	cytosol	70.77	41.44
TraesCS4A01G256500.1	Wheat	cytosol	70.07	41.03
Os03t0727600-01	Rice	cytosol	70.07	40.86
TraesCS4D01G058200.1	Wheat	cytosol	69.37	40.62
EER90948	Sorghum	cytosol	70.77	40.44
Solyc07g026900.1.1	Tomato	cytosol	58.8	37.87
Solyc12g008740.1.1	Tomato	cytosol	56.69	37.1
HORVU4Hr1G009800.5	Barley	cytosol, plastid	69.37	34.5
Solyc12g056180.1.1	Tomato	cytosol	53.17	31.92
Solyc08g081540.2.1	Tomato	cytosol	54.23	31.88
Solyc05g050010.2.1	Tomato	cytosol	53.17	31.72
Solyc01g095080.2.1	Tomato	cytosol	53.52	31.34
Solyc08g081550.2.1	Tomato	cytosol	50.0	30.08
Solyc03g007070.2.1	Tomato	cytosol	44.01	23.36
Solyc08g079750.2.1	Tomato	plastid	44.01	22.81
Solyc08g008100.2.1	Tomato	nucleus	28.17	21.92
Solyc01g007940.2.1	Tomato	cytosol	20.42	12.26
Solyc03g123600.2.1	Tomato	cytosol	20.77	12.19
Solyc06g063090.2.1	Tomato	extracellular	23.24	12.18
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	20.42	12.06
Solyc03g123610.2.1	Tomato	plastid	21.48	10.07

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:50.4.4	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
GO:GO:0016847	GO:GO:0030170	GO:GO:0042218	InterPro:IPR015421	InterPro:IPR015422	UniProt:K4B6N9
InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF10
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc02g063540.1	EnsemblPlants:Solyc02g063540.1.1
UniParc:UPI000276882E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:35648516..35649566

Molecular Weight (calculated)

31944.2 Da

IEP (calculated)

6.252

GRAVY (calculated)

-0.221

Length

284 amino acids

Sequence
(BLAST)

001: MKLLSKKAMC NSHGQDSSYF LGWEEYQKNP YDEIRNPKGI IQMGLAENQL SFDLLESWLT LNPDASAFKR NGHSIFRELS LFQDYHGLPA FKDALVQFMS
101: EIRGNKVSFD SNKLVLTAGA TSANETLMFC LADPGHAFLL PTPYYPGFDR DLKWRTGAEI VPIQCTSSNG FRITESALEE AYTEAERRNL RVKGVLVTNP
201: SNPLGTTLTK KELQLLLTFV STKQIHLISD EIYSGTVFNS PKFVSVMEVL IENNYMYTDV WDRVHIVYSL SKDLGLPGFR VGAX

Best Arabidopsis Sequence Match ( AT2G22810.1 )
(BLAST)

001: MVQLSRKATC NSHGQVSSYF LGWEEYEKNP YDVTKNPQGI IQMGLAENQL CFDLLESWLA QNTDAACFKR DGQSVFRELA LFQDYHGLSS FKNAFADFMS
101: ENRGNRVSFD SNNLVLTAGA TSANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGVEI VPIQSSSTNG FRITKLALEE AYEQAKKLDL NVKGILITNP
201: SNPLGTTTTQ TELNILFDFI TKNKNIHLVS DEIYSGTVFN SSEFISVMEI LKNNQLENTD VLNRVHIVCS LSKDLGLPGF RVGAIYSNDK DVISAATKMS
301: SFGLVSSQTQ YLLSSLLSDK KFTKNYLREN QKRLKNRQRK LVLGLEAIGI KCLKSNAGLF CWVDMRPLLR SKTFEAEMDL WKKIVYEVKL NISPGSSCHC
401: EEPGWFRVCF ANMIDETLKL ALKRLKMLVD DENSSRRCQK SKSERLNGSR KKTMSNVSNW VFRLSFHDRE AEER

Arabidopsis Description

ACS41-aminocyclopropane-1-carboxylate synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q43309]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.