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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69326
CDX75675
CDX86796
CDX89355
CDX89520
CDX92755
CDX94359
CDY13251
CDY25639
CDY39957
CDY42751
CDY53218
CDY66472
CDY69462
CDY71142
CDY72652

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G22810.1 CDY39957 AT1G80650.1 21798944
AT2G22810.1 CDY53218 AT1G80650.1 21798944
AT2G22810.1 CDX89520 AT2G22810.1 14983000
AT2G22810.1 CDY25639 AT2G22810.1 14983000
AT2G22810.1 CDX86796 AT4G11280.1 14983000
AT2G22810.1 CDY13251 AT4G11280.1 14983000
AT2G22810.1 CDX89355 AT4G26200.1 14983000
AT2G22810.1 CDX92755 AT4G26200.1 14983000
AT2G22810.1 CDX94359 AT4G26200.1 14983000
AT2G22810.1 CDY42751 AT4G26200.1 14983000
AT2G22810.1 CDY71142 AT4G26200.1 14983000
AT2G22810.1 CDY72652 AT4G26200.1 14983000
AT2G22810.1 CDX69326 AT4G37770.1 14983000
AT2G22810.1 CDX75675 AT4G37770.1 14983000
AT2G22810.1 CDY66472 AT4G37770.1 14983000
AT2G22810.1 CDY69462 AT4G37770.1 14983000
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25639 Canola cytosol 96.62 96.62
AT2G22810.1 Thale cress cytosol 87.34 87.34
CDY66472 Canola cytosol 69.2 81.39
CDX75675 Canola cytosol 77.43 81.37
CDX69326 Canola cytosol 79.75 80.6
CDY69462 Canola cytosol 78.48 79.32
VIT_00s1437g00010.t01 Wine grape cytosol 75.11 75.91
VIT_00s0840g00010.t01 Wine grape cytosol 75.11 75.91
Solyc02g063540.1.1 Tomato cytosol 45.36 75.7
PGSC0003DMT400008587 Potato cytosol 73.21 75.27
Solyc02g091990.2.1 Tomato cytosol 74.05 74.84
PGSC0003DMT400055203 Potato cytosol 73.63 74.41
PGSC0003DMT400008605 Potato cytosol 66.24 74.23
CDY18674 Canola cytosol 68.35 73.8
CDY02111 Canola cytosol 73.0 73.62
CDY23035 Canola cytosol 72.36 73.61
CDX81296 Canola cytosol 68.14 73.58
CDY08163 Canola cytosol 72.78 73.4
CDY05953 Canola cytosol 72.15 72.77
KRH04373 Soybean cytosol 71.94 71.79
KRH77167 Soybean cytosol 71.1 71.7
KRH28319 Soybean cytosol 70.68 71.13
Solyc03g043890.2.1 Tomato cytosol 70.25 70.7
KRH58165 Soybean cytosol 71.31 70.42
GSMUA_Achr2P08600_001 Banana cytosol 68.35 69.98
GSMUA_Achr3P25830_001 Banana mitochondrion 66.24 69.93
GSMUA_Achr1P14280_001 Banana nucleus 66.46 68.93
PGSC0003DMT400013977 Potato cytosol 54.01 68.63
GSMUA_Achr4P01340_001 Banana mitochondrion 66.46 68.18
GSMUA_Achr5P08880_001 Banana cytosol 65.82 66.95
GSMUA_Achr1P04420_001 Banana cytosol 63.92 65.58
CDY34015 Canola cytosol 63.29 64.66
CDX83146 Canola cytosol 63.08 64.44
TraesCS4A01G256500.1 Wheat cytosol 63.08 61.65
TraesCS4B01G058200.1 Wheat cytosol 63.08 61.65
Zm00001d033862_P001 Maize cytosol 63.08 61.65
Os03t0727600-01 Rice cytosol 63.08 61.4
TraesCS4D01G058200.1 Wheat cytosol 62.66 61.24
EER90948 Sorghum cytosol 62.87 59.96
CDY42751 Canola cytosol 54.22 56.98
CDX89355 Canola cytosol 53.8 56.92
CDY71142 Canola cytosol 53.59 56.7
CDX94359 Canola cytosol 53.16 56.25
CDX92755 Canola cytosol 48.73 55.53
CDY72652 Canola cytosol 23.21 54.73
HORVU4Hr1G009800.5 Barley cytosol, plastid 62.66 52.01
CDY11360 Canola cytosol 49.58 49.68
CDX86796 Canola cytosol 50.84 49.39
CDY13251 Canola cytosol 50.84 49.08
CDY15174 Canola cytosol 51.27 48.99
CDY65356 Canola cytosol 48.73 48.84
CDX90035 Canola cytosol 44.94 47.65
CDY46931 Canola mitochondrion, plastid 39.66 37.6
CDY43579 Canola cytosol, mitochondrion, plastid 15.19 37.5
CDX91604 Canola mitochondrion, plastid 39.45 37.4
CDY45474 Canola cytosol 37.97 34.42
CDY45965 Canola cytosol 37.97 33.15
CDX68271 Canola mitochondrion 5.7 21.09
CDX91708 Canola peroxisome 17.3 20.35
CDY25780 Canola peroxisome 17.09 20.1
CDY41452 Canola peroxisome 19.62 19.46
CDY61225 Canola peroxisome 19.62 19.33
CDY66294 Canola cytosol 19.62 19.33
CDY44130 Canola cytosol 19.41 19.25
CDY04729 Canola cytosol 19.41 19.25
CDY50645 Canola cytosol 8.65 18.98
CDY26256 Canola mitochondrion 20.04 17.69
CDY48485 Canola plastid 20.04 17.59
CDX83914 Canola mitochondrion 20.04 17.56
CDX81815 Canola mitochondrion 20.04 17.3
CDY21752 Canola mitochondrion 19.83 17.18
CDX96776 Canola mitochondrion 19.41 16.97
CDX88411 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 4.64 16.79
CDX86159 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 4.64 16.79
CDX91589 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 4.64 16.79
CDY12474 Canola peroxisome, plastid 18.78 16.57
CDY03822 Canola cytosol 4.43 16.28
CDX83913 Canola cytosol, nucleus, peroxisome 4.22 15.62
CDY25781 Canola cytosol 1.9 15.52
CDX68272 Canola nucleus 3.38 14.41
CDX86161 Canola cytosol 2.95 10.61
Protein Annotations
MapMan:11.5.1.1Gene3D:3.40.640.10Gene3D:3.90.1150.10GO:A0A078DK38InterPro:Aminotransferase_I/IIEnsemblPlants:CDX89520
ProteinID:CDX89520ProteinID:CDX89520.1GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0030170EnsemblPlantsGene:GSBRNA2T00149815001InterPro:IPR015421InterPro:IPR015422
InterPro:NHTrfase_class1_PyrdxlP-BSPFAM:PF00155PRINTS:PR00753ScanProsite:PS00105PANTHER:PTHR43795PANTHER:PTHR43795:SF10
InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383UniParc:UPI0004EE2440SEG:seg
Description
BnaC04g35390D
Coordinates
chrLK031859:-:774717..776544
Molecular Weight (calculated)
53622.9 Da
IEP (calculated)
8.196
GRAVY (calculated)
-0.329
Length
474 amino acids
Sequence
(BLAST)
001: MDLLSRKATC NSHGQDSSYF LGWEEYEKNP HDVVKNPHGI IQMGLAENQL CFDLLESWLI QNPDAASFKR DGQSIFRELA LFQDYNGLSS FKKALADFMS
101: ENRQNRVSFD SNNLVLTAGA TSANETLMFC LANPGDAFLL PTPYYPGFDR DLKWRTGVEI VPIQCSSRNG FCITKLALEE AYEQAKKLNL NVKGVLITNP
201: SNPLGTTTTQ TELNILFEFI SKNKNIHLVS DEVYSGTAFS SSEFISVMEI LKTNQFENTD VFKRVHIVYS LSKDLGLPGF RVGAIYSNDK DVISAATKMS
301: SFGLVSSQTQ YLLSSLLSDK KFTKNYLREN QRRLNNRQRM LVTGLKAIGI GCLKSNAGLF CWVDMRHLLS SKTFEAEMDL WKKIVYEVKL NISPGSSCHC
401: EEPGWFRVCF ANMSEETLKL AMKRLKNFVD NGTLSRSCQV GESQSLKSSR KKTTTTVSNW VFRLSFHDRD TEER
Best Arabidopsis Sequence Match ( AT2G22810.1 )
(BLAST)
001: MVQLSRKATC NSHGQVSSYF LGWEEYEKNP YDVTKNPQGI IQMGLAENQL CFDLLESWLA QNTDAACFKR DGQSVFRELA LFQDYHGLSS FKNAFADFMS
101: ENRGNRVSFD SNNLVLTAGA TSANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGVEI VPIQSSSTNG FRITKLALEE AYEQAKKLDL NVKGILITNP
201: SNPLGTTTTQ TELNILFDFI TKNKNIHLVS DEIYSGTVFN SSEFISVMEI LKNNQLENTD VLNRVHIVCS LSKDLGLPGF RVGAIYSNDK DVISAATKMS
301: SFGLVSSQTQ YLLSSLLSDK KFTKNYLREN QKRLKNRQRK LVLGLEAIGI KCLKSNAGLF CWVDMRPLLR SKTFEAEMDL WKKIVYEVKL NISPGSSCHC
401: EEPGWFRVCF ANMIDETLKL ALKRLKMLVD DENSSRRCQK SKSERLNGSR KKTMSNVSNW VFRLSFHDRE AEER
Arabidopsis Description
ACS41-aminocyclopropane-1-carboxylate synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q43309]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.