Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020472_P001 | Maize | nucleus | 39.74 | 25.41 |
| CDY53218 | Canola | nucleus | 61.54 | 23.88 |
| Bra008448.1-P | Field mustard | nucleus | 61.54 | 23.76 |
| AT1G80650.1 | Thale cress | nucleus | 55.13 | 21.72 |
| Zm00001d020476_P001 | Maize | nucleus | 39.74 | 16.85 |
| Os09t0416500-01 | Rice | nucleus | 38.46 | 16.67 |
| EER96734 | Sorghum | nucleus | 32.05 | 14.53 |
| KRH09670 | Soybean | plastid | 35.9 | 14.43 |
| TraesCS5D01G233400.1 | Wheat | cytosol | 30.77 | 13.87 |
| TraesCS5A01G226200.1 | Wheat | cytosol | 33.33 | 13.76 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 32.05 | 13.16 |
| Zm00001d005754_P001 | Maize | cytosol, peroxisome, plastid | 7.69 | 4.23 |
Protein Annotations
| EnsemblPlants:CDY39957 | EnsemblPlantsGene:GSBRNA2T00068839001 | Gene3D:3.30.160.20 | PFAM:PF14709 | ProteinID:CDY39957 | ProteinID:CDY39957.1 |
| SEG:seg | UniParc:UPI0004EE32AC | UniProt:A0A078HQ51 | MapMan:16.10.1.4.2 | : | : |
Description
BnaC06g40350DBnaC06g40350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ51]
Coordinates
chrLK032461:-:84989..85764
Molecular Weight (calculated)
8655.3 Da
IEP (calculated)
9.089
GRAVY (calculated)
-0.406
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MIAAKHNLPS YFEITTFFTY KVVVEIKDSS GTTTVLECFG DPKRKKKAAA EHAAEGALWY LDHVQGKSDK TASSTQMK
001: MEDQETKRIT KKPSRSIIIS LKDIPPLDPS SIPSMKPMAQ DHHNVGMQRF QEKTDFKFEE EDNAISSFSN IQIDPNSTRS ISLEKKLAPK PDEEHTTTTK
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ
Arabidopsis Description
RTL1Ribonuclease 3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8N2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.