Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96734 | Sorghum | nucleus | 64.08 | 52.91 |
| Zm00001d020476_P001 | Maize | nucleus | 61.27 | 47.28 |
| Os09t0416500-01 | Rice | nucleus | 36.62 | 28.89 |
| Zm00001d020472_P001 | Maize | nucleus | 22.54 | 26.23 |
| TraesCS5D01G233400.1 | Wheat | cytosol | 26.06 | 21.39 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 28.17 | 21.05 |
| TraesCS5A01G226200.1 | Wheat | cytosol | 24.65 | 18.52 |
| AT4G00420.4 | Thale cress | nucleus | 14.79 | 11.05 |
| KRH09670 | Soybean | plastid | 14.08 | 10.31 |
| CDY53218 | Canola | nucleus | 14.08 | 9.95 |
| Bra008448.1-P | Field mustard | nucleus | 14.08 | 9.9 |
| AT1G80650.1 | Thale cress | nucleus | 11.27 | 8.08 |
| CDY39957 | Canola | cytosol | 4.23 | 7.69 |
Protein Annotations
| EnsemblPlants:Zm00001d005754_P001 | EnsemblPlants:Zm00001d005754_T001 | EnsemblPlantsGene:Zm00001d005754 | ProteinID:ONM21803.1 | UniParc:UPI000844F08F | UniProt:A0A1D6EPV6 |
| MapMan:35.2 | : | : | : | : | : |
Description
Ribonuclease 3-like protein 1
Coordinates
chr2:-:186345211..186352223
Molecular Weight (calculated)
15935.1 Da
IEP (calculated)
6.777
GRAVY (calculated)
-0.677
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MHAILYTICM TSRATLHSVV MEPPRKNKSS GMQVKEEVKL EDGNDLLVKR RRTELPGSIV QLQQKIEVFD MENKVPDGLS VEDSTGKDPM DVLTRYAAQN
101: SGQGNSCSNE PAISRLTKIC KAIGWKEPSY DFEEQGPPHN RM
101: SGQGNSCSNE PAISRLTKIC KAIGWKEPSY DFEEQGPPHN RM
001: MLLQRCESKF KIRKLNDTVE EDNVTQMEPN FTLENTLVSE PEADLRPHTT EPTTEEETQR SSAKSQLYNL CSVRHWKAPL YEYIAEGPCH MKIFTGKVTV
101: EMKEDSRITV LECFGNPQYK KKIAAEQAAE AALWYLKNVG YTLQTEKASG RKGRSKPISK MMVTGEPV
101: EMKEDSRITV LECFGNPQYK KKIAAEQAAE AALWYLKNVG YTLQTEKASG RKGRSKPISK MMVTGEPV
Arabidopsis Description
Double-stranded RNA-binding domain (DsRBD)-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JHB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.