Factsheet for Zm00001d044925_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d002454_P002
Zm00001d003429_P001
Zm00001d023606_P005
Zm00001d025593_P001
Zm00001d025599_P001
Zm00001d025607_P001
Zm00001d038652_P003
Zm00001d041839_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT2G47400.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT2G47400.1	Zm00001d038652_P003	AT5G42980.1	15352244
AT3G62410.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT3G62410.1	Zm00001d002454_P002	AT1G32060.1	17947231
AT3G62410.1	Zm00001d003429_P001	AT3G26650.1	17947231
AT3G62410.1	Zm00001d025593_P001	AT3G26650.1	17947231
AT3G62410.1	Zm00001d025599_P001	AT3G26650.1	17947231
AT3G62410.1	Zm00001d025607_P001	AT3G26650.1	17947231
AT3G62410.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	49.29	55.65
EER88061	Sorghum	plastid	50.71	55.04
TraesCS2D01G034400.1	Wheat	plastid	45.71	50.79
TraesCS2B01G048200.1	Wheat	plastid	45.71	50.79
TraesCS2A01G035100.1	Wheat	plastid	45.71	50.79
GSMUA_Achr11P...	Banana	plastid	45.0	48.84
GSMUA_Achr8P10530_001	Banana	plastid	44.29	48.44
Bra003499.1-P	Field mustard	plastid	44.29	48.06
CDX67892	Canola	plastid	44.29	48.06
CDX80101	Canola	plastid	42.86	47.62
CDY25110	Canola	plastid	43.57	47.29
CDY27491	Canola	plastid	42.14	47.2
CDX95723	Canola	plastid	42.14	46.83
CDY55379	Canola	plastid	42.14	46.83
AT2G47400.1	Thale cress	plastid	41.43	46.77
CDY51422	Canola	plastid	41.43	46.77
KRH31794	Soybean	plastid	42.86	46.51
Bra004459.1-P	Field mustard	plastid	42.14	46.46
Bra021396.1-P	Field mustard	plastid	40.71	45.97
CDY11420	Canola	plastid	42.14	45.38
Bra007678.1-P	Field mustard	plastid	42.14	45.38
Zm00001d028880_P001	Maize	plastid	40.0	44.44
CDX83329	Canola	plastid	40.0	44.44
Bra000451.1-P	Field mustard	plastid	40.0	44.44
AT3G62410.1	Thale cress	plastid	41.43	44.27
KRH69219	Soybean	plastid	40.0	43.75
CDX76635	Canola	plastid	39.29	42.64
Solyc06g009630.1.1	Tomato	plastid	38.57	42.52
KRH68260	Soybean	plastid	40.0	42.42
Solyc01g079470.2.1	Tomato	plastid	36.43	41.13
PGSC0003DMT400018798	Potato	cytosol	35.71	39.68
PGSC0003DMT400023336	Potato	plastid	35.0	39.52
KRG96526	Soybean	nucleus	40.0	33.94
VIT_01s0026g02480.t01	Wine grape	extracellular	42.14	29.95

Protein Annotations

EMBL:EU971788	EnsemblPlants:Zm00001d044925_P001	EnsemblPlants:Zm00001d044925_T001	EnsemblPlantsGene:Zm00001d044925	EntrezGene:100281649	InterPro:DUF_CP12
ncoils:Coil	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9	PFAM:PF02672	ProteinID:AQL01145.1	SEG:seg
SMART:SM01093	UniParc:UPI000182E9C0	UniProt:B6U3H3	MapMan:35.1	:	:

Description

CP12-1

Coordinates

chr9:-:7355249..7355671

Molecular Weight (calculated)

14725.0 Da

IEP (calculated)

4.473

GRAVY (calculated)

-0.422

Length

140 amino acids

Sequence
(BLAST)

001: MAASTVASLS VPVTTTTFAA AGGGDVLIVV PRRAGAKRVV WFPAAARRGG GRLVAVRSSG PATPPEISDK VSESIKQAEE TCADDQKGDA ECAAAWDEVE
101: ELSATASHAR DSLKETNAND PLEKYCKDNP DSEECRIYDN

Best Arabidopsis Sequence Match ( AT2G47400.1 )
(BLAST)

001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN

Arabidopsis Description

CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.