Factsheet for Zm00001d023606_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002501_P001
Zm00001d007577_P001
Zm00001d028880_P001
Zm00001d044925_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	Zm00001d028880_P001	AT2G47400.1	21798944
AT1G34430.1	Zm00001d044925_P001	AT2G47400.1	21798944
AT1G34430.1	Zm00001d002501_P001	AT3G17668.1	21798944
AT1G34430.1	Zm00001d007577_P001	AT3G18140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78843	Sorghum	plastid	95.62	95.41
TraesCS5D01G126000.1	Wheat	cytosol	82.28	92.16
TraesCS5B01G116300.1	Wheat	golgi, unclear	90.37	89.98
TraesCS5A01G119600.1	Wheat	plastid	89.5	89.69
Os12t0182200-01	Rice	plastid	87.75	85.87
KRH34962	Soybean	plastid	75.27	73.35
KRG91819	Soybean	endoplasmic reticulum, nucleus	74.4	73.12
Zm00001d041839_P001	Maize	plastid	94.31	72.68
VIT_18s0072g01000.t01	Wine grape	plastid	74.84	71.7
Solyc11g017250.1.1	Tomato	plastid	72.43	70.73
PGSC0003DMT400023831	Potato	plastid	70.9	69.83
HORVU5Hr1G038090.3	Barley	plastid	65.43	69.37
AT1G34430.1	Thale cress	plastid	70.24	69.03
Zm00001d032224_P001	Maize	plastid	68.27	66.24
Zm00001d020426_P001	Maize	plastid	62.8	63.22
GSMUA_Achr3P17420_001	Banana	cytosol	34.14	62.65
Zm00001d050383_P001	Maize	plastid	67.83	59.39
Zm00001d053580_P002	Maize	mitochondrion	31.95	26.5
Zm00001d034531_P001	Maize	mitochondrion	28.23	26.17
Zm00001d016365_P002	Maize	mitochondrion	32.17	23.82
Zm00001d025258_P009	Maize	mitochondrion	19.91	20.4
Zm00001d040670_P004	Maize	mitochondrion	22.98	20.08
Zm00001d003923_P002	Maize	mitochondrion	19.69	19.03
CDY34925	Canola	mitochondrion	10.5	18.68
Bra040295.1-P	Field mustard	mitochondrion	10.5	18.68
TraesCS5D01G125900.1	Wheat	plastid	2.41	3.61
CDY69187	Canola	cytosol, nucleus	0.0	0.0
CDY17299	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

EntrezGene:100274483	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10
MapMan:5.1.2.2.2	ProteinID:AQK39650.1	UniProt:B4G1C9	EMBL:BT043167	EMBL:BT054893	EMBL:BT085822
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	EMBL:EU966581	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF61	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI00017B8224	EnsemblPlantsGene:Zm00001d023606	EnsemblPlants:Zm00001d023606_P005
EnsemblPlants:Zm00001d023606_T005	SEG:seg	:	:	:	:

Description

Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex chloroplastic

Coordinates

chr10:-:11858189..11863254

Molecular Weight (calculated)

47662.4 Da

IEP (calculated)

8.301

GRAVY (calculated)

0.019

Length

457 amino acids

Sequence
(BLAST)

001: MAGLLHLQST LLPSASALRR RAGAPVPCSS RRRCRVEAKI REIFMPALSS TMTEGKIVSW TAAEGDRLSK GDPVVVVESD KADMDVETFH DGFLAAVLVP
101: AGESAPVGSA IALLAESEEE IPVAQSQAAS FSSSSPSPPP PQETAQEASP SPPPPPPSAP VAVSAPALPS PATQGGGRVV ASPYAKKLAK DLGVDLFSVT
201: GSGPGGRIVA KDVEAALAAP KKAAPVTAAR PDVPLGSTVP FTTMQGAVSK NMVESLAVPT FRVGYTITTD ALDQLYKKIK SKGVTMTALL AKATAMALVQ
301: HPVVNCSCRD GKSFTYNKSI NIAVAVAIDG GLITPVLQDA DKLDIYSLSR KWKELVDKAR AKQLQPHEYN SGTFTLSNLG MFGVDRFDAI LPPGTGAIMA
401: VGASEPTVVG TKDGRIGIKS QMQVNVTADH RVIYGADLAA FLQTLAKIIE DPKDLTF

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.