Factsheet for Zm00001d025258_P009

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT4G26910.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003923_P002	Maize	mitochondrion	95.07	89.64
Os04t0394200-01	Rice	mitochondrion	87.89	89.09
TraesCS2D01G039500.2	Wheat	mitochondrion	87.89	88.09
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	87.67	87.87
TraesCS2B01G053600.1	Wheat	mitochondrion	84.08	87.82
OQU93042	Sorghum	mitochondrion	91.93	87.79
Solyc12g005080.1.1	Tomato	nucleus	63.68	76.76
VIT_19s0090g00750.t01	Wine grape	cytosol	60.99	69.39
Bra035551.1-P	Field mustard	mitochondrion	65.7	67.36
PGSC0003DMT400071652	Potato	mitochondrion	69.73	66.03
KRH14369	Soybean	nucleus	68.16	65.52
KRH73773	Soybean	mitochondrion	67.94	65.3
VIT_10s0116g01480.t01	Wine grape	mitochondrion	69.06	65.12
Solyc07g064800.2.1	Tomato	extracellular, nucleus	68.16	64.96
Bra002934.1-P	Field mustard	mitochondrion	67.71	64.81
CDY06613	Canola	mitochondrion	67.71	64.81
CDY17300	Canola	mitochondrion	67.71	64.81
AT5G55070.1	Thale cress	mitochondrion	67.26	64.66
PGSC0003DMT400057449	Potato	mitochondrion	67.71	64.53
CDY20790	Canola	mitochondrion	67.26	64.52
CDY19918	Canola	mitochondrion	67.04	64.44
AT4G26910.1	Thale cress	mitochondrion	65.02	62.5
CDY21016	Canola	mitochondrion, plastid	64.13	60.08
Bra016809.1-P	Field mustard	mitochondrion, plastid	63.9	60.0
Bra028992.1-P	Field mustard	mitochondrion	66.37	59.92
CDY31217	Canola	mitochondrion, plastid	64.57	59.88
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	13.0	57.43
CDY12012	Canola	plastid	67.04	57.28
CDY36727	Canola	plastid	66.82	55.7
Zm00001d034531_P001	Maize	mitochondrion	27.8	25.15
Zm00001d053580_P002	Maize	mitochondrion	28.7	23.23
Zm00001d016365_P002	Maize	mitochondrion	28.92	20.91
Zm00001d020426_P001	Maize	plastid	21.08	20.7
Zm00001d023606_P005	Maize	plastid	20.4	19.91
Zm00001d032224_P001	Maize	plastid	19.96	18.9
Zm00001d050383_P001	Maize	plastid	20.18	17.24
Zm00001d040670_P004	Maize	mitochondrion	19.28	16.44
Zm00001d041839_P001	Maize	plastid	20.18	15.18

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	ProteinID:AQK43329.1	UniProt:B6TFG5	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EMBL:EU963730
GO:GO:0003674	GO:GO:0003824	GO:GO:0004149	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016746	GO:GO:0045252	InterPro:IPR000089	InterPro:IPR023213	PFAM:PF00198
PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI000182E519	EnsemblPlantsGene:Zm00001d025258
EnsemblPlants:Zm00001d025258_P009	EnsemblPlants:Zm00001d025258_T009	SEG:seg	:	:	:

Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Coordinates

chr10:+:111489893..111495229

Molecular Weight (calculated)

48680.5 Da

IEP (calculated)

8.405

GRAVY (calculated)

-0.277

Length

446 amino acids

Sequence
(BLAST)

001: MASRVASGLL RRRAGATLGL LRSYAHVRSY NSQLSALVSA TSECSNLPRR CYYLPNPSPY QVWSRSFASD NGDKFEAVVP FMGESVTDGT LANFLKKPGD
101: RVEADEPIAQ IETDKVTIDV ASPEAGVIEK LIASEGDTVT PGTKVAIISK SAQPAETHVA PSEEATSKES SPPKVEDKPK VEEKAPKVDP PKMQAPKPTA
201: PSKTSPSEPQ LPPKERERRV PMPRLRKRIA NRLKDSQNTF AMLSTFNEVD MTNLMKLRSD YKDEFVTKHG VKLGLMSCFV KAAVSALQNQ PIVNAVIDGD
301: DIIYRDYVDI SVAVGTSKGL VVPVIRDADT MNFADIEKGI NNLAKKATEG ALSIDDMAGG TFTISNGGVY GSLLSTPIIN PPQSSILGMH SIVQRPVVVN
401: GDILARPMMY LALTYDHRLI DGREAVFFLR RIKDVVEDPR RLLLDI

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.