Factsheet for VIT_19s0090g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005080.1.1	Tomato	nucleus	72.7	77.03
GSMUA_AchrUn_...	Banana	mitochondrion	76.28	66.15
VIT_10s0116g01480.t01	Wine grape	mitochondrion	79.34	65.75
Os02t0514700-00	Rice	mitochondrion	66.58	65.58
GSMUA_Achr3P18670_001	Banana	mitochondrion	74.23	64.38
Solyc07g064800.2.1	Tomato	extracellular, nucleus	76.53	64.1
PGSC0003DMT400057449	Potato	mitochondrion	76.02	63.68
PGSC0003DMT400071652	Potato	mitochondrion	76.02	63.27
Bra035551.1-P	Field mustard	mitochondrion	69.13	62.3
Os04t0394200-01	Rice	mitochondrion	69.9	62.27
TraesCS4D01G070200.1	Wheat	mitochondrion	69.13	61.87
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	69.13	61.87
TraesCS4B01G071300.1	Wheat	mitochondrion	68.88	61.64
CDY19918	Canola	mitochondrion	72.19	60.99
Zm00001d025258_P009	Maize	mitochondrion	69.39	60.99
AT5G55070.1	Thale cress	mitochondrion	71.94	60.78
TraesCS2D01G039500.2	Wheat	mitochondrion	68.62	60.45
KRH73773	Soybean	mitochondrion	71.43	60.34
Bra002934.1-P	Field mustard	mitochondrion	71.68	60.3
CDY17300	Canola	mitochondrion	71.68	60.3
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	68.37	60.22
CDY06613	Canola	mitochondrion	71.43	60.09
CDY20790	Canola	mitochondrion	71.17	60.0
AT4G26910.1	Thale cress	mitochondrion	70.92	59.91
GSMUA_Achr9P01190_001	Banana	cytosol	75.77	59.76
KRH14369	Soybean	nucleus	70.41	59.48
TraesCS2B01G053600.1	Wheat	mitochondrion	64.54	59.25
CDY21016	Canola	mitochondrion, plastid	70.92	58.4
Bra016809.1-P	Field mustard	mitochondrion, plastid	70.66	58.32
OQU93042	Sorghum	mitochondrion	69.39	58.24
CDY31217	Canola	mitochondrion, plastid	71.43	58.21
Zm00001d003923_P002	Maize	mitochondrion	68.88	57.08
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	69.13	56.93
Bra028992.1-P	Field mustard	mitochondrion	70.92	56.28
CDY12012	Canola	plastid	71.43	53.64
CDY36727	Canola	plastid	71.43	52.34
VIT_11s0016g01870.t01	Wine grape	mitochondrion	28.32	20.29
VIT_09s0002g01800.t01	Wine grape	mitochondrion	28.06	19.82
VIT_01s0011g03380.t01	Wine grape	plastid	22.96	18.44
VIT_18s0072g01000.t01	Wine grape	plastid	22.19	18.24
VIT_05s0077g02080.t01	Wine grape	cytosol	21.43	18.14
VIT_13s0074g00150.t01	Wine grape	mitochondrion	27.04	16.67
Os01t0314100-01	Rice	mitochondrion	21.17	15.87
Os01t0314000-01	Rice	cytosol	1.02	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	EntrezGene:100257173	wikigene:100257173	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase
MapMan:2.3.4.2	Gene3D:2.40.50.100	Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ProteinID:CBI26660
ProteinID:CBI26660.3	UniProt:D7T801	EMBL:FN595751	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
InterPro:IPR000089	InterPro:IPR023213	EntrezGene:LOC100257173	wikigene:LOC100257173	PFAM:PF00198	PFAM:PF00364
ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI0001BE2BDF	ArrayExpress:VIT_19s0090g00750	EnsemblPlantsGene:VIT_19s0090g00750
EnsemblPlants:VIT_19s0090g00750.t01	RefSeq:XP_002279269	RefSeq:XP_002279269.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:6806654..6809964

Molecular Weight (calculated)

42884.4 Da

IEP (calculated)

8.422

GRAVY (calculated)

-0.109

Length

392 amino acids

Sequence
(BLAST)

001: MQMQSRHFSS DNGDLVDAVV PFMGEYISDG ILAKFLKNAG DRVQVDEPIA QIEIDKVTID VASLKAGVIQ KFVAKEGDVV DPGTKIAVIS KSGESVTHVA
101: SSKKKLDEAA PKPPPAAEIK NENKKSKPET APVMGKPKVP PSPPPKQSAS EPVLPPKERE RRISLVPMTR LRKRVAMHLK DSQNTFAMLK TFNEFDMTNL
201: MKLRSDYKDA FFEKHGVKLR FMSGFVKAAV SGLQNQPIIN AVIDGDDIIY RDYINISIAV GTPKGLVVPV ICDAGRMNFA EIEKEINTLA KKANDGTISI
301: DEMAGGSFTI SNGGVYGSLL STPIINPPQS AILGMYSIVK RPMVVGGNII ATSMMYIALT YDHWLIDGRE AVLFLRHIKE VMEDPCCLLL DI

Best Arabidopsis Sequence Match ( AT4G26910.1 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PAGNSGISRS ASLVSSTLQR WVRPFSAETG DTVEAVVPHM
101: GESITDGTLA TFLKKPGERV QADEAIAQIE TDKVTIDIAS PASGVIQEFL VNEGDTVEPG TKVAIISKSE DTASQVTPSQ KIPETTDTKP SPPAEDKQKP
201: RVESAPVAEK PKAPSSPPPP KQSAKEPQLP PKERERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFYEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRGADKMN FAEIEKTINS LAKKANEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VSRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRV KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.