Factsheet for Solyc07g064800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	Solyc02g086840.2.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057449	Potato	mitochondrion	97.22	97.22
Solyc12g005080.1.1	Tomato	nucleus	67.95	85.95
VIT_19s0090g00750.t01	Wine grape	cytosol	64.1	76.53
Bra035551.1-P	Field mustard	mitochondrion	69.44	74.71
GSMUA_Achr3P18670_001	Banana	mitochondrion	70.73	73.23
GSMUA_AchrUn_...	Banana	mitochondrion	70.3	72.79
CDY19918	Canola	mitochondrion	72.01	72.63
VIT_10s0116g01480.t01	Wine grape	mitochondrion	73.29	72.52
CDY06613	Canola	mitochondrion	71.79	72.1
CDY20790	Canola	mitochondrion	71.37	71.83
KRH73773	Soybean	mitochondrion	71.15	71.77
Bra002934.1-P	Field mustard	mitochondrion	71.15	71.46
CDY17300	Canola	mitochondrion	71.15	71.46
KRH14369	Soybean	nucleus	70.73	71.34
AT5G55070.1	Thale cress	mitochondrion	70.73	71.34
AT4G26910.1	Thale cress	mitochondrion	70.3	70.91
Os04t0394200-01	Rice	mitochondrion	66.24	70.45
TraesCS4D01G070200.1	Wheat	mitochondrion	65.6	70.09
TraesCS4B01G071300.1	Wheat	mitochondrion	65.38	69.86
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	65.17	69.63
Os02t0514700-00	Rice	mitochondrion	58.97	69.35
TraesCS2D01G039500.2	Wheat	mitochondrion	65.17	68.54
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	64.96	68.31
Zm00001d025258_P009	Maize	mitochondrion	64.96	68.16
TraesCS2B01G053600.1	Wheat	mitochondrion	62.18	68.15
GSMUA_Achr9P01190_001	Banana	cytosol	72.22	68.01
Bra028992.1-P	Field mustard	mitochondrion	70.73	67.0
CDY21016	Canola	mitochondrion, plastid	67.95	66.81
Bra016809.1-P	Field mustard	mitochondrion, plastid	67.73	66.74
CDY31217	Canola	mitochondrion, plastid	68.38	66.53
OQU93042	Sorghum	mitochondrion	65.6	65.74
Zm00001d003923_P002	Maize	mitochondrion	64.96	64.27
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	65.17	64.08
CDY12012	Canola	plastid	70.73	63.41
CDY36727	Canola	plastid	71.15	62.24
Solyc07g006790.2.1	Tomato	plastid	25.64	21.7
Solyc01g066520.2.1	Tomato	plastid	20.09	18.61
Solyc11g017250.1.1	Tomato	plastid	18.38	18.38
Os01t0314100-01	Rice	mitochondrion	20.51	18.36
Solyc05g009530.2.1	Tomato	plastid	17.52	17.86
Solyc11g007720.1.1	Tomato	nucleus, unclear	23.72	17.24
Os01t0314000-01	Rice	cytosol	0.85	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
InterPro:IPR000089	InterPro:IPR023213	UniProt:K4CHF9	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189
PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
EnsemblPlantsGene:Solyc07g064800.2	EnsemblPlants:Solyc07g064800.2.1	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI000276C82F	SEG:seg

Description

No Description!

Coordinates

chr7:+:66786200..66792382

Molecular Weight (calculated)

51136.8 Da

IEP (calculated)

9.438

GRAVY (calculated)

-0.236

Length

468 amino acids

Sequence
(BLAST)

001: MLGVLRRKAI SSASFTSCVR KSLHTVRPAV CKSRIPSAAA EEISLLTRQC GHVRNFNQLV LPGCSSNLRP ERAVTNLFSS PTLSNWSRPF CANSGDTVDA
101: VVPYMGESIS DGTLAKFLKN VGDRVEVDEP IAQIETDKVT IDVTSPEAGV IQKFIAKEGD TVEPGNKVAI ISKSGEGVEH VAPSEKSSEK VAPAAEDKKE
201: EKAKPQVETT PVKEKPKGSS PPPPKRSPTE LQLPPKERER RVPMTRLRKR VATRLKDSQN TFALLTTFNE VDMTNLMKLR SDYKDAFFEK HGVKLGFMSG
301: FVKAAVSALQ NQPIVNAVID GDDIIYRDYI DISIAVGTPK GLVVPVIRNA EQMNFAEIEK TINSLAKKAN DGSISIDEMA GGSFTISNGG VYGSLISTPI
401: INPPQSAILG MHSIVSRPMV VGGNIVPRPM MYIALTYDHR LIDGREAVFF LRRIKDVVED PRRLLLDV

Best Arabidopsis Sequence Match ( AT4G26910.2 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PGNSGISRSA SLVSSTLQRW VRPFSAETGD TVEAVVPHMG
101: ESITDGTLAT FLKKPGERVQ ADEAIAQIET DKVTIDIASP ASGVIQEFLV NEGDTVEPGT KVAIISKSED TASQVTPSQK IPETTDTKPS PPAEDKQKPR
201: VESAPVAEKP KAPSSPPPPK QSAKEPQLPP KERERRVPMT RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFYEKHGVKL GLMSGFIKAA
301: VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRGADKMNF AEIEKTINSL AKKANEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ
401: SAILGMHSIV SRPMVVGGSV VPRPMMYVAL TYDHRLIDGR EAVYFLRRVK DVVEDPQRLL LDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.