Factsheet for Solyc11g007720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92074	Soybean	cytosol, mitochondrion	14.44	84.55
VIT_13s0074g00150.t01	Wine grape	mitochondrion	70.5	71.38
TraesCS7A01G305100.1	Wheat	mitochondrion	46.58	67.87
TraesCS7B01G205500.1	Wheat	mitochondrion	46.43	67.65
CDX73652	Canola	mitochondrion	19.25	66.31
Os06t0499900-01	Rice	mitochondrion	47.67	63.43
KXG37311	Sorghum	mitochondrion	47.52	63.22
Zm00001d034531_P001	Maize	mitochondrion	47.98	62.68
GSMUA_AchrUn_...	Banana	mitochondrion	47.98	62.42
KRG92075	Soybean	mitochondrion	50.0	62.16
KRH34708	Soybean	mitochondrion	62.89	59.91
Bra033446.1-P	Field mustard	mitochondrion	59.47	59.75
CDX95323	Canola	mitochondrion	59.32	59.59
TraesCS7D01G301900.1	Wheat	golgi	47.36	58.21
HORVU7Hr1G072650.1	Barley	mitochondrion	47.2	58.02
CDY23199	Canola	mitochondrion, plastid	59.47	55.59
AT3G52200.2	Thale cress	mitochondrion	60.4	54.56
Bra006910.1-P	Field mustard	mitochondrion	53.57	47.26
Solyc07g006790.2.1	Tomato	plastid	31.06	36.17
Solyc11g017250.1.1	Tomato	plastid	21.89	30.13
Solyc05g009530.2.1	Tomato	plastid	20.34	28.54
Solyc12g005080.1.1	Tomato	nucleus	16.3	28.38
Solyc07g064800.2.1	Tomato	extracellular, nucleus	17.24	23.72
Solyc01g066520.2.1	Tomato	plastid	16.93	21.58

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	UniProt:K4D533	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF9	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	EnsemblPlantsGene:Solyc11g007720.1	EnsemblPlants:Solyc11g007720.1.1	UniParc:UPI000276A5A6
SEG:seg	:	:	:	:	:

Description

Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:K4D533]

Coordinates

chr11:-:1946450..1963262

Molecular Weight (calculated)

68692.3 Da

IEP (calculated)

6.174

GRAVY (calculated)

-0.148

Length

644 amino acids

Sequence
(BLAST)

001: MALSRLRHPL IFRAPSLLRA RRLLAAGPCN SSTLRSLHHV PGVLNQIPDV DASSLRLLNF RLLSEVHVVP SKLQSGVRHF SSAEAPSYTE VGMPALSPTM
101: TQGNIAKWIK KEGDKIQAGD VLCLIETDKA TLEFETLEEG FLAKILVPEG TKDVPVGQTI AITVEEADDI QKVPATVGGA SEVKNQASSQ TDAARGDGAT
201: EVSPANISSS ELPPHLILDM PALSPTMNQG NIFKWRKKEG DKIEVGDVLC EIETDKATLE HESLEEGFLA KILAPEGSKD VAVGQPIAIM VEDENDIEAV
301: RTSISGNNVV KEEKPVSHDV TTEVRTQTTG FNRISPAAKV LIMEHGLDAS SIPASGPRGT LLKGDVLAAL KSGKGSSNNS SVGKATPSPP QVNQQATPTK
401: SLDLKSDGQQ KDAYEDLPNS QIRKVIAARL LESKQSTPHL YLSTDVILDS LLSFRKELKE KYDVKVSVND IVIKVVAATL RNVPGANAYW DDGKGEVVLC
501: DSVDISVAVA TEKGLMTPII RNADQKSISS ISAEIKELAG KARAGKLKPN EFQGGTFSIS NLGMFPVDRF CAIINPPQAG IIAVGRGNKV VEPVVGADGI
601: EKPAVVNKMS LTLSADHRVF DGKVGGAFVS ALSSNFSDIK KLLL

Best Arabidopsis Sequence Match ( AT3G52200.1 )
(BLAST)

001: MVLPLFRRAA IARTSSLLRA RLFAPASEFH SRFSNGLYHL DDKISSSNGV RSASIDLITR MDDSSPKPIL RFGVQNFSST GPISQTVLAM PALSPTMSHG
101: NVVKWMKKEG DKVEVGDVLC EIETDKATVE FESQEEGFLA KILVTEGSKD IPVNEPIAIM VEEEDDIKNV PATIEGGRDG KEETSAHQVM KPDESTQQKS
201: SIQPDASDLP PHVVLEMPAL SPTMNQGNIA KWWKKEGDKI EVGDVIGEIE TDKATLEFES LEEGYLAKIL IPEGSKDVAV GKPIALIVED AESIEAIKSS
301: SAGSSEVDTV KEVPDSVVDK PTERKAGFTK ISPAAKLLIL EHGLEASSIE ASGPYGTLLK SDVVAAIASG KASKSSASTK KKQPSKETPS KSSSTSKPSV
401: TQSDNNYEDF PNSQIRKIIA KRLLESKQKI PHLYLQSDVV LDPLLAFRKE LQENHGVKVS VNDIVIKAVA VALRNVRQAN AFWDAEKGDI VMCDSVDISI
501: AVATEKGLMT PIIKNADQKS ISAISLEVKE LAQKARSGKL APHEFQGGTF SISNLGMYPV DNFCAIINPP QAGILAVGRG NKVVEPVIGL DGIEKPSVVT
601: KMNVTLSADH RIFDGQVGAS FMSELRSNFE DVRRLLL

Arabidopsis Description

LTA3Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F4J5T2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.