CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034531_P001	Maize	mitochondrion	95.25	93.51
TraesCS7A01G305100.1	Wheat	mitochondrion	76.65	83.94
TraesCS7B01G205500.1	Wheat	mitochondrion	76.45	83.71
Os06t0499900-01	Rice	mitochondrion	83.68	83.68
KRG92074	Soybean	cytosol, mitochondrion	17.77	78.18
TraesCS7D01G301900.1	Wheat	golgi	80.17	74.05
HORVU7Hr1G072650.1	Barley	mitochondrion	79.55	73.47
GSMUA_AchrUn_...	Banana	mitochondrion	66.32	64.85
CDX73652	Canola	mitochondrion	23.55	60.96
VIT_13s0074g00150.t01	Wine grape	mitochondrion	68.18	51.89
Solyc11g007720.1.1	Tomato	nucleus, unclear	63.22	47.52
Bra033446.1-P	Field mustard	mitochondrion	59.92	45.24
CDX95323	Canola	mitochondrion	59.92	45.24
KRH34708	Soybean	mitochondrion	62.4	44.67
KRG92075	Soybean	mitochondrion	46.07	43.05
CDY23199	Canola	mitochondrion, plastid	59.92	42.09
AT3G52200.2	Thale cress	mitochondrion	60.33	40.95
Bra006910.1-P	Field mustard	mitochondrion	53.51	35.48
EES04754	Sorghum	mitochondrion	39.26	35.25
OQU78843	Sorghum	plastid	25.41	26.86
OQU89472	Sorghum	plastid	25.21	26.58
OQU93042	Sorghum	mitochondrion	25.21	26.12
EES15031	Sorghum	plastid	25.21	25.68
EES02874	Sorghum	mitochondrion	23.76	21.99

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	UniProt:A0A1B6QHB4	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf
InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004742	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006090	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045254	InterPro:IPR000089
InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	EnsemblPlants:KXG37311	ProteinID:KXG37311	ProteinID:KXG37311.1
InterPro:LAT1	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF9	EnsemblPlantsGene:SORBI_3001G047600	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	TIGRFAMs:TIGR01349	UniParc:UPI0001C80CA3	:

Description

hypothetical protein

Coordinates

chr1:-:3492239..3500520

Molecular Weight (calculated)

52034.3 Da

IEP (calculated)

7.016

GRAVY (calculated)

-0.235

Length

484 amino acids

Sequence
(BLAST)

001: MANIRALLVG LSRARGSLAE VGRCASTRPS LLASLGAHYK IPMPAHWFSS AGLPPHLVVG MPALSPTMNQ GNIAKWRKQE GDKIEVGDVI CEIETDKATL
101: EFESLEEGYL AKILAPEGSK DVQVGQPIAV TVEDLEDIKS IPADTSFGGE QKEEHSTESV PQNKVVNVPE QTSTVSRISP AAKLLIKEHG LDTSSLRATG
201: PRGTLLKGDV LAALKSGVSS SSIKEKKAPA QPSSQPTRDS QAQASPVSQK ADTYEDIPNS QIRKVIAKRL LESKQTTPHL YLSKDVVLDP LLAFRNELKE
301: QHGIKVSVND IIIKAVAIAL RNVPEANAYW NNEKEETQKC DSVDISIAVA TEKGLMTPIV RNADQKTISA ISSEVKQLAE KARAGKLAPN EFQGGTFSIS
401: NLGMYPVDHF CAIINPPQSG ILAVGRGNKV VEPVVDSDGT EKAAAVTKMS LTLSADHRVF DGQVGGKFFT ELALNFSDIR RLLL

Best Arabidopsis Sequence Match ( AT3G52200.1 )
(BLAST)

001: MVLPLFRRAA IARTSSLLRA RLFAPASEFH SRFSNGLYHL DDKISSSNGV RSASIDLITR MDDSSPKPIL RFGVQNFSST GPISQTVLAM PALSPTMSHG
101: NVVKWMKKEG DKVEVGDVLC EIETDKATVE FESQEEGFLA KILVTEGSKD IPVNEPIAIM VEEEDDIKNV PATIEGGRDG KEETSAHQVM KPDESTQQKS
201: SIQPDASDLP PHVVLEMPAL SPTMNQGNIA KWWKKEGDKI EVGDVIGEIE TDKATLEFES LEEGYLAKIL IPEGSKDVAV GKPIALIVED AESIEAIKSS
301: SAGSSEVDTV KEVPDSVVDK PTERKAGFTK ISPAAKLLIL EHGLEASSIE ASGPYGTLLK SDVVAAIASG KASKSSASTK KKQPSKETPS KSSSTSKPSV
401: TQSDNNYEDF PNSQIRKIIA KRLLESKQKI PHLYLQSDVV LDPLLAFRKE LQENHGVKVS VNDIVIKAVA VALRNVRQAN AFWDAEKGDI VMCDSVDISI
501: AVATEKGLMT PIIKNADQKS ISAISLEVKE LAQKARSGKL APHEFQGGTF SISNLGMYPV DNFCAIINPP QAGILAVGRG NKVVEPVIGL DGIEKPSVVT
601: KMNVTLSADH RIFDGQVGAS FMSELRSNFE DVRRLLL

Arabidopsis Description

LTA3Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F4J5T2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.