CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG24345
KXG31546
OQU78843

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	OQU78843	AT1G34430.1	21798944
AT3G25860.1	KXG24345	AT1G79070.1	21798944
AT3G25860.1	KXG31546	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032224_P001	Maize	plastid	94.32	95.12
Zm00001d050383_P001	Maize	plastid	94.53	86.02
Os08t0431300-01	Rice	plastid	85.89	85.89
TraesCS5A01G476700.1	Wheat	plastid	84.0	84.18
TraesCS5B01G489600.1	Wheat	golgi	84.0	84.0
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	83.79	83.97
GSMUA_Achr3P07350_001	Banana	cytosol	68.0	79.36
OQU89472	Sorghum	plastid	71.16	73.64
HORVU5Hr1G112850.3	Barley	plastid	81.68	72.39
VIT_01s0011g03380.t01	Wine grape	plastid	70.95	69.06
OQU78843	Sorghum	plastid	66.32	68.78
Solyc05g009530.2.1	Tomato	plastid	66.11	68.41
PGSC0003DMT400033754	Potato	plastid	65.05	67.17
CDX83563	Canola	plastid	66.95	66.81
KRH75381	Soybean	plastid	60.0	66.74
CDY13593	Canola	plastid	66.53	66.25
Bra025167.1-P	Field mustard	plastid	66.53	66.25
AT3G25860.1	Thale cress	plastid	66.74	66.04
CDY39183	Canola	plastid	65.47	65.89
Bra017345.1-P	Field mustard	plastid	66.32	65.76
CDY04184	Canola	plastid	66.32	65.76
KRG90801	Soybean	endoplasmic reticulum, nucleus	68.21	64.03
EES04754	Sorghum	mitochondrion	30.11	26.53
KXG37311	Sorghum	mitochondrion	25.68	25.21
EES02874	Sorghum	mitochondrion	22.95	20.84
OQU93042	Sorghum	mitochondrion	19.16	19.49

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
EntrezGene:8075401	InterPro:Biotin_lipoyl	UniProt:C5YL64	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	EnsemblPlants:EES15031
ProteinID:EES15031	ProteinID:EES15031.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826
InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF67	EnsemblPlantsGene:SORBI_3007G134800	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	unigene:Sbi.11728	InterPro:Single_hybrid_motif	UniParc:UPI0001A87B1D	RefSeq:XP_002445536.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:55984779..55988879

Molecular Weight (calculated)

49104.4 Da

IEP (calculated)

9.394

GRAVY (calculated)

0.077

Length

475 amino acids

Sequence
(BLAST)

001: MATAPAPLSL SASTLPARLR AGAVPAGARW RQQPRRGRMV VRAKIREIFM PALSSTMTEG KIVSWSAGEG DRVSKGDAVV VVESDKADMD VETFHDGIVA
101: AVLVQAGESA PVGAPIALLA ESEEEVPLAV AKAQELSNGN GQPQQAPPAP TEDAAAAPPP PPPAPAAAPA PVAAGTKGIA SPHAKKLAKQ HRVDLAKVTG
201: TGPYGRITPA DIEAAAGIQP KPKPAPAAAA PPPVAAPSVG AVPQAAVLPP VPGATIVPFT TMQAAVSKNM VESLAVPAFR VGYPIVTDKL DALYEKVKPK
301: GVTMTVLLAK ATAMALVQHP VVNASCRDGK SFTYNSNINI AVAVAIDGGL ITPVLQDADK LDIYLLSQNW KDLVKKARAK QLQPNEYSSG TFTLSNLGMF
401: GVDRFDAILP PGQGAIMAVG ASKPTVVADK DGFFSVKSKM LVNVTADHRI VYGADLAAFL QTFAKIIEDP ESLTL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.