Factsheet for HORVU5Hr1G112850.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G027540.1
HORVU5Hr1G038090.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	HORVU5Hr1G038090.3	AT1G34430.1	21798944
AT3G25860.1	HORVU3Hr1G027540.1	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	81.72	92.41
TraesCS5A01G476700.1	Wheat	plastid	81.16	91.77
TraesCS5B01G489600.1	Wheat	golgi	80.6	90.95
EES15031	Sorghum	plastid	72.39	81.68
Zm00001d032224_P001	Maize	plastid	71.27	81.1
Os08t0431300-01	Rice	plastid	71.46	80.63
Zm00001d050383_P001	Maize	plastid	72.95	74.9
GSMUA_Achr3P07350_001	Banana	cytosol	56.34	74.2
HORVU5Hr1G061140.1	Barley	plastid	61.19	70.84
VIT_01s0011g03380.t01	Wine grape	plastid	61.01	67.01
CDX83563	Canola	plastid	58.58	65.97
KRH75381	Soybean	plastid	52.43	65.81
CDY13593	Canola	plastid	58.4	65.62
Bra025167.1-P	Field mustard	plastid	58.4	65.62
Solyc05g009530.2.1	Tomato	plastid	55.78	65.14
PGSC0003DMT400033754	Potato	plastid	55.78	65.0
AT3G25860.1	Thale cress	plastid	58.02	64.79
CDY39183	Canola	plastid	56.34	63.98
Bra017345.1-P	Field mustard	plastid	57.09	63.88
CDY04184	Canola	plastid	57.09	63.88
KRG90801	Soybean	endoplasmic reticulum, nucleus	58.21	61.66
HORVU5Hr1G038090.3	Barley	plastid	41.6	51.74
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	24.81	24.91
HORVU7Hr1G072650.1	Barley	mitochondrion	23.32	23.86
HORVU7Hr1G001330.9	Barley	plastid	25.37	23.57
HORVU2Hr1G012440.1	Barley	cytosol	17.91	21.77
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	16.98	19.12

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
UniProt:A0A287SRR6	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	EnsemblPlantsGene:HORVU5Hr1G112850	EnsemblPlants:HORVU5Hr1G112850.3
InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151
PANTHER:PTHR23151:SF67	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI000B47C25F
SEG:seg	:	:	:	:	:

Description

Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A287SRR6]

Coordinates

chrchr5H:+:640375912..640380968

Molecular Weight (calculated)

53362.1 Da

IEP (calculated)

9.576

GRAVY (calculated)

0.115

Length

536 amino acids

Sequence
(BLAST)

001: AGILSNTARA SGMPNSAFPR LAFSALASNT HSKPNPATLP PRPPPSSSAM AASSAPLSFS ASASSLPARL RLAAPAASCA ATTRRRRPMV VRAKIREIFM
101: PALSSTMTEG KIVSWAAAEG DRVTKGDAVV VVESDKADMD VETFYDGIVA AVLVPAGESA PVGAPIALLA ESEEDVALAV AQAQALSSGQ GQPQQQAPAL
201: SDAADSPPPP AAAPVAAAPA AVAAGTKGVA TPQAKKLAKQ HRVDLANVTG TGQFGRITPA DVEAFAGIQP KPKVAPAPAA APVAAASSVR AVPQAAVLPP
301: VPGATVVPFT AMQAAVSKNM VESLSVPAFR VGYPILTDKL DELYEKVKPK GVTMTVLLAK AAAMALAQHP VVNASCRDGT SFTYNSSINI AVAVSIDGGL
401: ITPVLEQADK LDIYLLSQKW KELVKKARAK QLQPNEYNSG TFTLSNLGMF GVDRFDAILP PGQGAIMAVG ASKSTVVADK DGFFSVQNKM LVNVTADHRI
501: VYGADLAAFL XXXXXXXXXX XXXXXXXNFC ENYRGP

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.