Factsheet for PGSC0003DMT400033754

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023831
PGSC0003DMT400056908
PGSC0003DMT400064666

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	PGSC0003DMT400023831	AT1G34430.1	21798944
AT3G25860.1	PGSC0003DMT400056908	AT1G79070.1	21798944
AT3G25860.1	PGSC0003DMT400064666	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009530.2.1	Tomato	plastid	96.96	97.17
GSMUA_Achr3P07350_001	Banana	cytosol	67.83	76.66
VIT_01s0011g03380.t01	Wine grape	plastid	76.3	71.93
KRH75381	Soybean	plastid	66.52	71.66
AT3G25860.1	Thale cress	plastid	74.57	71.46
CDX83563	Canola	plastid	73.7	71.22
Bra025167.1-P	Field mustard	plastid	73.48	70.86
CDY13593	Canola	plastid	73.48	70.86
CDY39183	Canola	plastid	72.39	70.55
Bra017345.1-P	Field mustard	plastid	72.83	69.94
CDY04184	Canola	plastid	72.83	69.94
KRG90801	Soybean	endoplasmic reticulum, nucleus	73.7	67.0
Zm00001d032224_P001	Maize	plastid	68.04	66.45
TraesCS5A01G476700.1	Wheat	plastid	67.83	65.82
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	67.61	65.61
TraesCS5B01G489600.1	Wheat	golgi	67.39	65.26
EES15031	Sorghum	plastid	67.17	65.05
Os08t0431300-01	Rice	plastid	66.74	64.63
TraesCS3B01G372900.1	Wheat	plastid	62.17	63.0
OQU89472	Sorghum	plastid	62.83	62.96
Zm00001d020426_P001	Maize	plastid	61.96	62.78
TraesCS5D01G212800.1	Wheat	plastid	63.04	62.63
HORVU5Hr1G061140.1	Barley	plastid	62.83	62.42
TraesCS5B01G204800.1	Wheat	plastid	62.61	62.2
PGSC0003DMT400023831	Potato	plastid	61.96	61.42
Os09t0408600-01	Rice	plastid	64.78	59.48
Zm00001d050383_P001	Maize	plastid	67.39	59.39
TraesCS5A01G206600.2	Wheat	plastid	57.39	56.9
HORVU5Hr1G112850.3	Barley	plastid	65.0	55.78
PGSC0003DMT400048225	Potato	mitochondrion	31.3	26.09
PGSC0003DMT400029466	Potato	mitochondrion	23.7	21.58
PGSC0003DMT400071652	Potato	mitochondrion	19.35	18.9
PGSC0003DMT400057449	Potato	mitochondrion	18.26	17.95

Protein Annotations

EntrezGene:102592754	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10
MapMan:5.1.2.2.2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004742	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746
GO:GO:0022626	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	UniProt:M1AZL8
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	EnsemblPlantsGene:PGSC0003DMG400012966	PGSC:PGSC0003DMG400012966	EnsemblPlants:PGSC0003DMT400033754
ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF75
SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI00029492BF	RefSeq:XP_006362562.1
SEG:seg	:	:	:	:	:

Description

Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400012966]

Coordinates

chr5:+:2287629..2293817

Molecular Weight (calculated)

48341.2 Da

IEP (calculated)

7.647

GRAVY (calculated)

-0.001

Length

460 amino acids

Sequence
(BLAST)

001: MASLQSSAIS FSSSLGRFST TRTMLPQKPR NYKLPVVESK IREIFMPALS STMTEGKIVS WVKSEGDVLS KGESVVVVES DKADMDVETF YDGILAVIVV
101: NEGETALVGA PIGLLAETED EIAEAKAKAK GQSGGSSSGS ESTPEPQSPV GVSSDEPKKI VATPNAKKLA KQHKIDINKV NGTGPFGRII SEDVEKAAGI
201: TPAPSKSISP PPAAATAAAP AVGTPAKAAP VSLPEIPGST VVPFTTMQVA VSKNMMESLS VPTFRVGYPV ITDALDDLYL KVKKKGVTMT ALLAKAAAMA
301: LAQHPVVNSS CKDGKSFTYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVE KARAKQLQPH EYNSGTFTLS NLGMFGVDRF DAILPPGQGA
401: IMAVGASKPT PVANADGFFS VKNKMLVNVT ADHRVVYGAD LAAFLQTFSK IIENPDSLTM

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.