Factsheet for TraesCS3B01G372900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G143400.1
TraesCS3B01G161700.1
TraesCS3D01G144200.1
TraesCS5A01G119600.1
TraesCS5B01G116300.1
TraesCS5D01G125900.1
TraesCS5D01G126000.1
TraesCS7A01G310700.1
TraesCS7B01G210500.1
TraesCS7D01G307200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	TraesCS5A01G119600.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5B01G116300.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5D01G125900.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5D01G126000.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS7A01G310700.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS7B01G210500.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS7D01G307200.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS3A01G143400.1	AT3G25545.1	21798944
AT3G25860.1	TraesCS3B01G161700.1	AT3G25545.1	21798944
AT3G25860.1	TraesCS3D01G144200.1	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G204800.1	Wheat	plastid	96.7	94.82
TraesCS5D01G212800.1	Wheat	plastid	96.04	94.17
HORVU5Hr1G061140.1	Barley	plastid	94.71	92.87
TraesCS5A01G206600.2	Wheat	plastid	88.55	86.64
OQU89472	Sorghum	plastid	79.74	78.87
Zm00001d020426_P001	Maize	plastid	77.97	77.97
Os09t0408600-01	Rice	plastid	80.18	72.65
GSMUA_Achr3P07350_001	Banana	cytosol	63.88	71.25
TraesCS5B01G489600.1	Wheat	golgi	73.79	70.53
Solyc05g009530.2.1	Tomato	plastid	64.54	63.83
CDY39183	Canola	plastid	66.3	63.77
Bra017345.1-P	Field mustard	plastid	67.18	63.67
CDX83563	Canola	plastid	66.74	63.66
CDY04184	Canola	plastid	66.96	63.47
CDY13593	Canola	plastid	66.52	63.31
Bra025167.1-P	Field mustard	plastid	66.52	63.31
AT3G25860.1	Thale cress	plastid	66.74	63.12
VIT_01s0011g03380.t01	Wine grape	plastid	67.84	63.11
KRH75381	Soybean	plastid	59.03	62.76
PGSC0003DMT400033754	Potato	plastid	63.0	62.17
KRG90801	Soybean	endoplasmic reticulum, nucleus	66.52	59.68
TraesCS5B01G116300.1	Wheat	golgi, unclear	60.13	59.48
TraesCS7B01G205500.1	Wheat	mitochondrion	26.65	27.38
TraesCS6B01G028600.1	Wheat	mitochondrion	28.63	24.44
TraesCS2B01G053600.1	Wheat	mitochondrion	18.94	20.14
TraesCS4B01G071300.1	Wheat	mitochondrion	18.94	19.63

Protein Annotations

InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2	InterPro:Biotin_lipoyl
InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD
PANTHER:PTHR23151	PANTHER:PTHR23151:SF67	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
EnsemblPlantsGene:TraesCS3B01G372900	EnsemblPlants:TraesCS3B01G372900.1	TIGR:cd06849	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:-:585729240..585731675

Molecular Weight (calculated)

47537.8 Da

IEP (calculated)

9.814

GRAVY (calculated)

0.132

Length

454 amino acids

Sequence
(BLAST)

001: MASLASLSIY TVPGRAGRAE SVHTPRRRRM AVVRAKVREI FMPALSSTMT EGKIVSWTTA EGDRVSKGDT VVVVESDKAG MDVETFHDGI IAAVLVPAGG
101: TALVGAPIAL LAESEEDVAL AQAQTPPPHA AATAPPTVAP APAPVAAPTN GIATPHAKKL AKQHRVDISN VVGTGLNGRI TAADVEAAAG IQSKPKAAPP
201: PPPAARSAPP AGTPLVTAVR QPGVLPPVPG ATVVPFTSMQ SAVSRNMVES LSVPTFRVGY AIKTDKLDAL YEKVKLKGVT KTLLLVKAAG MALAQHPVVN
301: ASCRDGKSFS YNSSINIAVA VAIEGGLLTP VLEDVDKLDI YIYLLAQKWR ALLKKTRMKQ LQPNEYNSGT FSLSNLGMFG VDRFDAILPP GQGAIMAVGA
401: SRPTVIADKD GFFSIKNEML VNVTADHRII YGADLAVFVQ TFAKIVEDPE SLTL

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.