Factsheet for TraesCS5D01G212800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G143400.1
TraesCS3B01G161700.1
TraesCS3D01G144200.1
TraesCS5A01G119600.1
TraesCS5B01G116300.1
TraesCS5D01G125900.1
TraesCS5D01G126000.1
TraesCS7A01G310700.1
TraesCS7B01G210500.1
TraesCS7D01G307200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	TraesCS5A01G119600.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5B01G116300.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5D01G125900.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5D01G126000.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS7A01G310700.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS7B01G210500.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS7D01G307200.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS3A01G143400.1	AT3G25545.1	21798944
AT3G25860.1	TraesCS3B01G161700.1	AT3G25545.1	21798944
AT3G25860.1	TraesCS3D01G144200.1	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G204800.1	Wheat	plastid	96.11	96.11
TraesCS3B01G372900.1	Wheat	plastid	94.17	96.04
HORVU5Hr1G061140.1	Barley	plastid	95.9	95.9
TraesCS5A01G206600.2	Wheat	plastid	89.42	89.22
OQU89472	Sorghum	plastid	80.13	80.83
Zm00001d020426_P001	Maize	plastid	78.4	79.96
Os09t0408600-01	Rice	plastid	81.21	75.05
GSMUA_Achr3P07350_001	Banana	cytosol	64.15	72.97
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	73.0	71.31
CDY39183	Canola	plastid	66.52	65.25
Bra017345.1-P	Field mustard	plastid	67.39	65.14
Bra025167.1-P	Field mustard	plastid	66.95	64.99
CDY04184	Canola	plastid	67.17	64.93
CDX83563	Canola	plastid	66.52	64.71
Solyc05g009530.2.1	Tomato	plastid	64.15	64.71
CDY13593	Canola	plastid	66.52	64.57
AT3G25860.1	Thale cress	plastid	66.52	64.17
VIT_01s0011g03380.t01	Wine grape	plastid	67.6	64.14
TraesCS5D01G126000.1	Wheat	cytosol	55.94	63.48
KRH75381	Soybean	plastid	58.53	63.47
PGSC0003DMT400033754	Potato	plastid	62.63	63.04
KRG90801	Soybean	endoplasmic reticulum, nucleus	66.74	61.07
TraesCS6D01G024400.1	Wheat	golgi, mitochondrion	28.51	24.35
TraesCS7D01G011600.1	Wheat	golgi, mitochondrion	27.65	23.66
TraesCS7D01G301900.1	Wheat	golgi	26.13	23.09
TraesCS2D01G073400.1	Wheat	mitochondrion	22.89	20.87
TraesCS4D01G070200.1	Wheat	mitochondrion	19.22	20.32
TraesCS2D01G039500.2	Wheat	mitochondrion	19.22	20.0
TraesCS5D01G125900.1	Wheat	plastid	2.81	4.26

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ncoils:Coil	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF67	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	EnsemblPlantsGene:TraesCS5D01G212800	EnsemblPlants:TraesCS5D01G212800.1	TIGR:cd06849
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:321901044..321903645

Molecular Weight (calculated)

48429.8 Da

IEP (calculated)

9.588

GRAVY (calculated)

0.112

Length

463 amino acids

Sequence
(BLAST)

001: MASLASLSIY TVPGRAVRAE SVQAPRRRRM AVVRAKVREI FMPALSSTMT EGKIVSWTTA EGDRVSKGDP VVVVESDKAD MDVETFHDGI IAAVLVPAGG
101: TAPVGAPIAL LAESEEDVAL AQARAQALSK ALGEETPPPH AAATAPPTVA PAPAPVTAPT NGIATPHAKK LAKQHRVDIS NVVGTGLNGR ITAADVEAAA
201: GIQPKPKAAP PPPPAAHSAP PAGIPLVTAV RQPGLLPPVP GATVVPFTSM QSAVSRNMVE SLSVPTFRVG YAIKTDKLDA LYEKVKLKGV TKTLLLVKAA
301: GMALAQHPVV NASCRDGKSF SYNSSINVAV AVAIEGGLLT PVLEDVDKLD IYLLAQKWRA LLKKTRLKQL QPNEYNSGTF SLSNLGMFGV DRFDAILPPG
401: QGAIMAVGAS RPTVIADKDG FFSIKNEMLV NVTADHRIIY GADLAAFLQT FAKIVEDPES LTL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.