CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87410
CDX88503
CDX99773
CDY03145
CDY12039
CDY33125
CDY46498

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	CDY03145	AT1G34430.1	21798944
AT3G25860.1	CDY12039	AT1G34430.1	21798944
AT3G25860.1	CDX87410	AT1G79070.1	21798944
AT3G25860.1	CDX88503	AT1G79070.1	21798944
AT3G25860.1	CDX99773	AT3G25545.1	21798944
AT3G25860.1	CDY33125	AT3G25545.1	21798944
AT3G25860.1	CDY46498	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017345.1-P	Field mustard	plastid	98.73	97.29
CDY04184	Canola	plastid	98.73	97.29
CDX83563	Canola	plastid	93.43	92.65
CDY13593	Canola	plastid	93.22	92.24
AT3G25860.1	Thale cress	plastid	91.31	89.79
GSMUA_Achr3P07350_001	Banana	cytosol	64.62	74.94
VIT_01s0011g03380.t01	Wine grape	plastid	76.48	73.98
Solyc05g009530.2.1	Tomato	plastid	71.82	73.86
PGSC0003DMT400033754	Potato	plastid	70.55	72.39
KRH75381	Soybean	plastid	64.83	71.66
KRG90801	Soybean	endoplasmic reticulum, nucleus	73.52	68.58
HORVU5Hr1G061140.1	Barley	plastid	65.47	66.74
TraesCS5B01G489600.1	Wheat	golgi	66.95	66.53
TraesCS5D01G212800.1	Wheat	plastid	65.25	66.52
TraesCS5A01G476700.1	Wheat	plastid	66.74	66.46
TraesCS3B01G372900.1	Wheat	plastid	63.77	66.3
Zm00001d032224_P001	Maize	plastid	65.89	66.03
Os08t0431300-01	Rice	plastid	66.31	65.89
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	66.1	65.82
EES15031	Sorghum	plastid	65.89	65.47
TraesCS5B01G204800.1	Wheat	plastid	64.19	65.44
OQU89472	Sorghum	plastid	62.71	64.49
Zm00001d020426_P001	Maize	plastid	61.44	63.88
CDY12039	Canola	plastid	60.17	63.11
CDY03145	Canola	plastid	60.17	62.28
Os09t0408600-01	Rice	plastid	64.83	61.08
TraesCS5A01G206600.2	Wheat	plastid	58.05	59.05
Zm00001d050383_P001	Maize	plastid	65.04	58.81
HORVU5Hr1G112850.3	Barley	plastid	63.98	56.34
CDX73652	Canola	mitochondrion	13.56	34.22
CDX82504	Canola	plastid	32.42	28.44
CDY33075	Canola	mitochondrion, plastid	32.42	27.57
CDY55206	Canola	mitochondrion	29.66	27.34
CDX75740	Canola	mitochondrion, plastid	32.42	27.27
CDX97529	Canola	mitochondrion	32.42	27.22
CDY24058	Canola	mitochondrion	31.99	27.21
CDX74077	Canola	mitochondrion, plastid	23.52	23.22
CDY08029	Canola	mitochondrion	23.73	23.09
CDX95323	Canola	mitochondrion	28.81	21.22
CDY23198	Canola	mitochondrion	7.63	19.89
CDY23199	Canola	mitochondrion, plastid	29.03	19.88
CDY20790	Canola	mitochondrion	19.49	19.78
CDY17300	Canola	mitochondrion	19.49	19.74
CDY06613	Canola	mitochondrion	19.49	19.74
CDY19918	Canola	mitochondrion	19.28	19.61
CDY31217	Canola	mitochondrion, plastid	19.7	19.33
CDY21016	Canola	mitochondrion, plastid	19.28	19.12
CDY34925	Canola	mitochondrion	10.38	19.07
CDY12012	Canola	plastid	19.7	17.82
CDY36727	Canola	plastid	19.92	17.57
CDY17299	Canola	cytosol, plastid	0.0	0.0
CDY69187	Canola	cytosol, nucleus	0.0	0.0

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
GO:A0A078HQY8	UniProt:A0A078HQY8	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY39183	ProteinID:CDY39183
ProteinID:CDY39183.1	ncoils:Coil	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	EnsemblPlantsGene:GSBRNA2T00067386001	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF75	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0004EEEFBE	SEG:seg	:

Description

BnaC09g21610DDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A078HQY8]

Coordinates

chrLK032442:-:282846..284866

Molecular Weight (calculated)

48947.6 Da

IEP (calculated)

9.502

GRAVY (calculated)

0.027

Length

472 amino acids

Sequence
(BLAST)

001: MAASSSFLST ASLSNPKSTI SFASSVSPAP IPSLRRVVFR SPSSHRRVTT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK NKAASKPSSS AVVPSPPPAT SSPAPAAAAS DGPRKTVATP HAKKLAKQHK VDIGSVAGTG
201: PFGRITASDV EAAAGVAPTV TPPPPPPSPA AAPAPTAKAT TTSSPPLLPD ASIVPFTAVQ SAVSKNMIES LSVPTFRVGY PVNTDALDAL YEKVKPKGVT
301: MTALLAKAAG MALAQHPVVN ASCKDGKSFS YNSNINVAVA VAINGGLITP VLQDADKLDL YLLSQKWKEL VGKARSKQLQ PHEYNSGTFT LSNLGMFGVD
401: RFDAILPPGQ GAIMAVGASK PTVVADKDGF FSVKNKMLVN VTADHRIVYG ADLAAFLQTF AKIVENPDSL TL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.