Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25545.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT3G25545.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT3G25545.1 | CDY25761 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026521.1-P | Field mustard | cytosol | 91.11 | 91.79 |
| CDY46498 | Canola | nucleus | 90.74 | 91.08 |
| AT3G25545.1 | Thale cress | cytosol | 80.74 | 81.65 |
| CDY33125 | Canola | cytosol | 53.33 | 76.19 |
| PGSC0003DMT400064666 | Potato | cytosol, plastid | 57.04 | 57.04 |
| Solyc05g010290.1.1 | Tomato | cytosol | 55.93 | 55.93 |
| VIT_09s0002g08050.t01 | Wine grape | cytosol | 24.07 | 50.39 |
| KRH71066 | Soybean | cytosol | 45.93 | 49.21 |
| VIT_01s0010g01100.t01 | Wine grape | cytosol, nucleus, plasma membrane | 57.41 | 39.34 |
| Os01t0219000-00 | Rice | peroxisome | 30.0 | 32.79 |
| TraesCS3B01G161700.1 | Wheat | cytosol | 28.15 | 31.8 |
| TraesCS3A01G143400.1 | Wheat | cytosol | 27.78 | 31.38 |
| KXG31546 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 27.78 | 31.25 |
| HORVU3Hr1G027540.1 | Barley | cytosol | 27.41 | 30.96 |
| Zm00001d039354_P001 | Maize | extracellular | 27.04 | 30.67 |
| TraesCS3D01G144200.1 | Wheat | cytosol | 27.04 | 30.54 |
Protein Annotations
| EnsemblPlants:CDX99773 | EnsemblPlantsGene:GSBRNA2T00108439001 | PANTHER:PTHR37227 | ProteinID:CDX99773 | ProteinID:CDX99773.1 | SEG:seg |
| UniParc:UPI0004EF1D0A | MapMan:35.2 | : | : | : | : |
Description
BnaC02g35470D
Coordinates
chrLK031913:-:1103384..1105081
Molecular Weight (calculated)
29572.4 Da
IEP (calculated)
5.392
GRAVY (calculated)
-0.110
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDALTENPP PSRFFQEDLN NFASPPPEPL PSPFIVFSNP KPELPLKPSL LIIALSSPSL HIFHSLPSKT LIGTLIIPEL PFSGNTVEPS LQDKSCNIYS
101: LSDNNNNNNN NAVLLVSVQL PVPPERSNLV SRLLVGQDIV PARVIILDSI QSRNFRGRLS PDEALAAKLE TSSEKKAAAT SRLSLDYFPS GSVIDGLSAS
201: LLSRCQLKNI RGTLVVSWPE FDPSVVRFLG ALLKSIVPSL DIKSVDKDLE KYSSRTGLKR DAWLDSDLYT
101: LSDNNNNNNN NAVLLVSVQL PVPPERSNLV SRLLVGQDIV PARVIILDSI QSRNFRGRLS PDEALAAKLE TSSEKKAAAT SRLSLDYFPS GSVIDGLSAS
201: LLSRCQLKNI RGTLVVSWPE FDPSVVRFLG ALLKSIVPSL DIKSVDKDLE KYSSRTGLKR DAWLDSDLYT
001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
Arabidopsis Description
AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.