Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25545.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT3G25545.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT3G25545.1 | CDY25761 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G25545.1 | Thale cress | cytosol | 79.37 | 56.18 |
| CDY46498 | Canola | nucleus | 77.25 | 54.28 |
| CDX99773 | Canola | cytosol | 76.19 | 53.33 |
| VIT_09s0002g08050.t01 | Wine grape | cytosol | 32.8 | 48.06 |
| PGSC0003DMT400064666 | Potato | cytosol, plastid | 52.38 | 36.67 |
| Solyc05g010290.1.1 | Tomato | cytosol | 51.32 | 35.93 |
| KRH71066 | Soybean | cytosol | 39.15 | 29.37 |
| VIT_01s0010g01100.t01 | Wine grape | cytosol, nucleus, plasma membrane | 52.91 | 25.38 |
| TraesCS3B01G161700.1 | Wheat | cytosol | 23.28 | 18.41 |
| Os01t0219000-00 | Rice | peroxisome | 23.81 | 18.22 |
| TraesCS3A01G143400.1 | Wheat | cytosol | 22.75 | 17.99 |
| Zm00001d039354_P001 | Maize | extracellular | 22.22 | 17.65 |
| HORVU3Hr1G027540.1 | Barley | cytosol | 22.22 | 17.57 |
| TraesCS3D01G144200.1 | Wheat | cytosol | 22.22 | 17.57 |
| KXG31546 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 22.22 | 17.5 |
Protein Annotations
| EnsemblPlants:CDY33125 | EnsemblPlantsGene:GSBRNA2T00053814001 | PANTHER:PTHR37227 | ProteinID:CDY33125 | ProteinID:CDY33125.1 | SEG:seg |
| UniParc:UPI0004EC7181 | UniProt:A0A078H3C5 | MapMan:35.2 | : | : | : |
Description
BnaC09g22210DBnaC09g22210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3C5]
Coordinates
chrLK032306:+:422402..422971
Molecular Weight (calculated)
20795.9 Da
IEP (calculated)
7.934
GRAVY (calculated)
-0.094
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEVPFSGNT VESSLQDKSC NIHSLTSSST DDKSSILLVS VQLHVSPERS NIVLRLLICQ DIITKRVIIM DSIQSRNFRG RLSPDETLAA KLETSSEKKA
101: ATTSRVNLDY YPSGSVIDGL SASLLSRCQV KNIRCSLVVS WPEFGPSVIR FVGALLKSIV PSLDVGSVNK DLEKYSSRKD AWIESDLYT
101: ATTSRVNLDY YPSGSVIDGL SASLLSRCQV KNIRCSLVVS WPEFGPSVIR FVGALLKSIV PSLDVGSVNK DLEKYSSRKD AWIESDLYT
001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
Arabidopsis Description
AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.