Factsheet for Zm00001d039354_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25545.1	Zm00001d002027_P002	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31546	Sorghum	cytosol, endoplasmic reticulum, peroxisome	86.55	85.83
TraesCS3A01G143400.1	Wheat	cytosol	78.99	78.66
HORVU3Hr1G027540.1	Barley	cytosol	78.15	77.82
TraesCS3B01G161700.1	Wheat	cytosol	78.15	77.82
TraesCS3D01G144200.1	Wheat	cytosol	78.15	77.82
Os01t0219000-00	Rice	peroxisome	78.15	75.3
KRH71066	Soybean	cytosol	38.24	36.11
Solyc05g010290.1.1	Tomato	cytosol	32.77	28.89
PGSC0003DMT400064666	Potato	cytosol, plastid	32.35	28.52
AT3G25545.1	Thale cress	cytosol	31.09	27.72
CDX99773	Canola	cytosol	30.67	27.04
Bra026521.1-P	Field mustard	cytosol	30.25	26.87
CDY46498	Canola	nucleus	30.25	26.77
VIT_09s0002g08050.t01	Wine grape	cytosol	13.45	24.81
CDY33125	Canola	cytosol	17.65	22.22
VIT_01s0010g01100.t01	Wine grape	cytosol, nucleus, plasma membrane	33.19	20.05

Protein Annotations

EMBL:BT088104	EnsemblPlants:Zm00001d039354_P001	EnsemblPlants:Zm00001d039354_T001	EnsemblPlantsGene:Zm00001d039354	EntrezGene:100277604	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	PANTHER:PTHR37227	ProteinID:ONM28436.1
SEG:seg	UniParc:UPI0001A4C775	UniProt:C4JBA7	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3:-:2377347..2378063

Molecular Weight (calculated)

24662.9 Da

IEP (calculated)

7.679

GRAVY (calculated)

0.171

Length

238 amino acids

Sequence
(BLAST)

001: MEDVITDVPP PSRFSPDDLD NFAAPPAQPT PIFVVSPNPS PPAPRLLVVF ISPTSLALLA SPPPLLASLL LPDLPLLPHA PMRVYLHPSG ALLAAAHGAF
101: PAHRARAAAK ALVSRLQPEE VLVLDAVRSG TYRGRLAADE PVEGKLETRA ARARGGVGAA KAVQALVPPG SVVDGLGAAV LAECEIRGKA ASMVVTWPAD
201: SRPAEFGVMR RVAAELGVDT GKAAARVSGR PDLDSLYT

Best Arabidopsis Sequence Match ( AT3G25545.1 )
(BLAST)

001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT

Arabidopsis Description

AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.