Factsheet for PGSC0003DMT400064666

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25545.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT3G25545.1	PGSC0003DMT400069203	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010290.1.1	Tomato	cytosol	95.56	95.56
Bra026521.1-P	Field mustard	cytosol	58.52	58.96
AT3G25545.1	Thale cress	cytosol	58.15	58.8
CDY46498	Canola	nucleus	58.52	58.74
CDX99773	Canola	cytosol	57.04	57.04
VIT_09s0002g08050.t01	Wine grape	cytosol	25.56	53.49
CDY33125	Canola	cytosol	36.67	52.38
KRH71066	Soybean	cytosol	45.56	48.81
VIT_01s0010g01100.t01	Wine grape	cytosol, nucleus, plasma membrane	64.81	44.42
Os01t0219000-00	Rice	peroxisome	31.48	34.41
KXG31546	Sorghum	cytosol, endoplasmic reticulum, peroxisome	29.63	33.33
Zm00001d039354_P001	Maize	extracellular	28.52	32.35
TraesCS3A01G143400.1	Wheat	cytosol	27.78	31.38
TraesCS3B01G161700.1	Wheat	cytosol	27.04	30.54
TraesCS3D01G144200.1	Wheat	cytosol	27.04	30.54
HORVU3Hr1G027540.1	Barley	cytosol	26.67	30.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400064666	EnsemblPlantsGene:PGSC0003DMG400025119	EntrezGene:102594783	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	PANTHER:PTHR37227	PGSC:PGSC0003DMG400025119	RefSeq:XP_006348774.1	RefSeq:XP_015164776.1
RefSeq:XP_015164777.1	SEG:seg	UniParc:UPI0002960148	UniProt:M1CCP8	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025119]

Coordinates

chr5:-:1415273..1419957

Molecular Weight (calculated)

29880.3 Da

IEP (calculated)

6.783

GRAVY (calculated)

0.039

Length

270 amino acids

Sequence
(BLAST)

001: MEDILTEIPP PSRFFLEDLN NFCPPSPPLP SPFLLFSTSN REKFSRPSLL IIAMSSPSLQ IFHHVSSKTL VGTVILPEIP FSGNSVEPSL KDKSCNIYAL
101: NEDDNLIMIV SVQYPVTAER SHAVAKLLIG EQVIPEKVLI LDSIRSSNFR GRLSPDEAFA FKLESSAERK AKADGHQDSP LVKCADYLPS GSVVDGLAAA
201: LLSRCQLKKI RGTLCVSWPE VGVSVISLVK SLLLKDVLSH VKHIDMKKLE EGFLKLGRSK DYLLEFELYT

Best Arabidopsis Sequence Match ( AT3G25545.1 )
(BLAST)

001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT

Arabidopsis Description

AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.