Factsheet for TraesCS5B01G489600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G143400.1
TraesCS3B01G161700.1
TraesCS3D01G144200.1
TraesCS5A01G119600.1
TraesCS5B01G116300.1
TraesCS5D01G125900.1
TraesCS5D01G126000.1
TraesCS7A01G310700.1
TraesCS7B01G210500.1
TraesCS7D01G307200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	TraesCS5A01G119600.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5B01G116300.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5D01G125900.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS5D01G126000.1	AT1G34430.1	21798944
AT3G25860.1	TraesCS7A01G310700.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS7B01G210500.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS7D01G307200.1	AT1G79070.1	21798944
AT3G25860.1	TraesCS3A01G143400.1	AT3G25545.1	21798944
AT3G25860.1	TraesCS3B01G161700.1	AT3G25545.1	21798944
AT3G25860.1	TraesCS3D01G144200.1	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G476700.1	Wheat	plastid	97.47	97.68
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	97.05	97.26
Os08t0431300-01	Rice	plastid	84.42	84.42
EES15031	Sorghum	plastid	84.0	84.0
Zm00001d032224_P001	Maize	plastid	82.32	83.01
HORVU5Hr1G112850.3	Barley	plastid	90.95	80.6
GSMUA_Achr3P07350_001	Banana	cytosol	66.74	77.89
Zm00001d050383_P001	Maize	plastid	81.68	74.33
TraesCS5B01G204800.1	Wheat	plastid	72.21	74.08
TraesCS3B01G372900.1	Wheat	plastid	70.53	73.79
VIT_01s0011g03380.t01	Wine grape	plastid	72.0	70.08
CDX83563	Canola	plastid	69.26	69.12
CDY13593	Canola	plastid	69.05	68.76
Bra025167.1-P	Field mustard	plastid	69.05	68.76
Solyc05g009530.2.1	Tomato	plastid	65.47	67.76
AT3G25860.1	Thale cress	plastid	68.21	67.5
PGSC0003DMT400033754	Potato	plastid	65.26	67.39
KRH75381	Soybean	plastid	60.21	66.98
CDY39183	Canola	plastid	66.53	66.95
CDY04184	Canola	plastid	67.16	66.6
Bra017345.1-P	Field mustard	plastid	67.16	66.6
TraesCS5B01G116300.1	Wheat	golgi, unclear	63.79	66.01
KRG90801	Soybean	endoplasmic reticulum, nucleus	68.63	64.43
TraesCS7B01G205500.1	Wheat	mitochondrion	26.95	28.96
TraesCS6B01G028600.1	Wheat	mitochondrion	28.42	25.38
TraesCS2B01G053600.1	Wheat	mitochondrion	20.21	22.48
TraesCS4B01G071300.1	Wheat	mitochondrion	19.79	21.46

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF67	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	EnsemblPlantsGene:TraesCS5B01G489600	EnsemblPlants:TraesCS5B01G489600.1	TIGR:cd06849	SEG:seg

Description

No Description!

Coordinates

chr5B:+:659415415..659418550

Molecular Weight (calculated)

48862.1 Da

IEP (calculated)

9.414

GRAVY (calculated)

0.183

Length

475 amino acids

Sequence
(BLAST)

001: MAASTAPLAF SASASALSAR LRLAAPPAPP SCAATTRRRR PVVVRAKIRE IFMPALSSTM TEGKIVSWAA AEGDRVAKGD AVVVVESDKA DMDVETFYDG
101: IVAAVLVPAG ETAPVGAPIA LLAESEEDVA LAVAQAQALS SKQPEQQAPA PSDAAASPPP PAAPVAAAPA PVAAGTKGVA TPQAKKLAKQ HRVDLAKVTG
201: TGQFGRITPA DVEAAAGIQP KPKVAPTPAA APVAAASPVR AVPQAAVLPP VPGATVVPFT AMQAAVSKNM VESLSVPAFR VGYPILTDKL DALYEKVKPK
301: GVTMTVLLAK AAAMALAQHP VVNASCRDGS SFTYNSSINI AVAVSIDGGL ITPVLEQADK LDIYLLSQKW KELVKKARAK QLQPNEYNSG TFTLSNLGMF
401: GVDRFDAILP PGQGAIMAVG ASKPTVAADK DGFFSVKSKM MVNVTADHRI VYGADLAAFL QTFAKIVEDP ESLTL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.