Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G310700.1 | Wheat | cytosol | 98.09 | 98.09 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 94.9 | 94.9 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 56.69 | 53.94 |
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 55.41 | 51.18 |
| KXG24345 | Sorghum | nucleus | 57.96 | 47.15 |
| GSMUA_Achr8P07100_001 | Banana | cytosol | 40.13 | 46.32 |
| GSMUA_Achr11P... | Banana | cytosol | 41.4 | 46.1 |
| AT1G79070.1 | Thale cress | nucleus | 34.39 | 39.13 |
| Solyc07g066370.2.1 | Tomato | cytosol | 35.67 | 37.58 |
| Bra035089.1-P | Field mustard | cytosol | 31.21 | 35.51 |
| CDX87410 | Canola | cytosol | 31.21 | 35.51 |
| CDX88503 | Canola | nucleus | 31.21 | 35.51 |
| KRH13655 | Soybean | nucleus | 35.03 | 35.48 |
| VIT_19s0027g00470.t01 | Wine grape | cytosol | 31.85 | 34.72 |
| PGSC0003DMT400056908 | Potato | nucleus | 33.76 | 34.64 |
| KRH43808 | Soybean | nucleus | 36.94 | 31.02 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G307200.1 | EnsemblPlantsGene:TraesCS7D01G307200 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0031083 | InterPro:Snapin |
| InterPro:Snapin/Pallidin/Snn1 | ncoils:Coil | PANTHER:PTHR31305 | PFAM:PF14712 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr7D:-:388994857..388999739
Molecular Weight (calculated)
16613.6 Da
IEP (calculated)
4.556
GRAVY (calculated)
-0.342
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPPLMDGFD LPTTSGPSAT IAGGDDRPPE ITGDGGLEDA DTGPHPDRCE ALAAAIAGVL GSALEEHEVR AAATAQSQAE LATAIDRLNG ELDKLLENAP
101: SPVIAQHAAR ISSIRKRVLA LNMLLRSIQR RIDNMDRMIS TGVTSDHSSR VQLQNQN
101: SPVIAQHAAR ISSIRKRVLA LNMLLRSIQR RIDNMDRMIS TGVTSDHSSR VQLQNQN
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Arabidopsis Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.