Factsheet for TraesCS5A01G063700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G376700.1
TraesCS6A01G017500.2
TraesCS6A01G326200.1
TraesCS6B01G024900.1
TraesCS6B01G356800.1
TraesCS6D01G020700.1
TraesCS6D01G306000.1
TraesCS7A01G078500.1
TraesCS7D01G073700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	TraesCS4A01G376700.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6A01G017500.2	AT1G77760.1	21798944
AT1G12840.1	TraesCS6A01G326200.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6B01G024900.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6B01G356800.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6D01G020700.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6D01G306000.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS7A01G078500.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS7D01G073700.1	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08840_001	Banana	cytosol	27.69	50.0
GSMUA_AchrUn_...	Banana	cytosol	28.1	44.16
Solyc03g097800.2.1	Tomato	nucleus	15.7	43.68
TraesCS1A01G440200.1	Wheat	cytosol	57.02	36.32
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	49.59	32.0
TraesCS1A01G282100.1	Wheat	cytosol	49.59	31.75
VIT_14s0068g01280.t01	Wine grape	mitochondrion	47.93	30.93
AT1G12840.1	Thale cress	cytosol	47.52	30.67
Bra019792.1-P	Field mustard	cytosol	47.52	30.67
CDX98037	Canola	cytosol	47.52	30.67
CDX71966	Canola	cytosol	47.52	30.42
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	47.11	30.32
CDY66539	Canola	cytosol	47.11	30.32
CDY21070	Canola	cytosol	47.11	30.32
CDY19421	Canola	cytosol	46.69	29.97
CDY16036	Canola	cytosol	47.52	24.26
Bra026951.1-P	Field mustard	cytosol	47.52	20.21
CDY26596	Canola	cytosol	47.52	18.73
CDY05652	Canola	cytosol	2.89	8.24
KRH62549	Soybean	mitochondrion	2.89	5.07
TraesCS7A01G285700.1	Wheat	cytosol	2.07	3.45

Protein Annotations

EnsemblPlants:TraesCS5A01G063700.1	EnsemblPlantsGene:TraesCS5A01G063700	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0033180
InterPro:ATPase_V1-cplx_csu	InterPro:Vac_ATP_synth_c_sf	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	PFAM:PF03223	SUPFAM:SSF118203
TIGR:cd14785	MapMan:24.1.1.2.3	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:69091773..69094046

Molecular Weight (calculated)

28091.8 Da

IEP (calculated)

9.043

GRAVY (calculated)

-0.251

Length

242 amino acids

Sequence
(BLAST)

001: MKVKRAKYDD VQRKLRVVNR KQGVVSLKEI DFYGLLQPED MVFSEHLVTL LVIVPITSQK EWLSTYEFLD PLVVPRSTKK IYEDRESALY TITLFAKAVP
101: NFKDRAWKKH FQVSDFMFSP EAYERRKQGI QELVHDQEVT KASLLQWLYG SYSEVFSRWM HVVTMLVFSE SRLRYGPHAR FLSVVLVPSM DNEGKIRNAL
201: EELTGGGKSY WNSADSEDAF ALMGLVGQTD PYHYVSFSIK VV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.