Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98037 | Canola | cytosol | 96.3 | 97.07 |
| CDY21070 | Canola | cytosol | 96.03 | 96.54 |
| CDY66539 | Canola | cytosol | 96.03 | 96.54 |
| CDY19421 | Canola | cytosol | 96.03 | 96.29 |
| AT1G12840.1 | Thale cress | cytosol | 95.5 | 96.27 |
| KRG94673 | Soybean | endoplasmic reticulum | 81.48 | 81.7 |
| VIT_14s0068g01280.t01 | Wine grape | mitochondrion | 80.95 | 81.6 |
| KRH08399 | Soybean | endoplasmic reticulum | 80.16 | 80.8 |
| KRH70055 | Soybean | endoplasmic reticulum | 79.89 | 80.53 |
| KRH06855 | Soybean | endoplasmic reticulum | 80.16 | 78.91 |
| CDY16036 | Canola | cytosol | 98.68 | 78.69 |
| Solyc03g097790.2.1 | Tomato | plastid | 62.17 | 77.56 |
| GSMUA_Achr4P08830_001 | Banana | mitochondrion, plastid | 51.59 | 76.47 |
| EES20054 | Sorghum | plastid | 75.66 | 75.86 |
| Os05t0593100-01 | Rice | plasma membrane | 75.4 | 75.6 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 51.59 | 75.58 |
| Zm00001d044665_P001 | Maize | plastid | 74.34 | 74.54 |
| Zm00001d039157_P001 | Maize | plastid | 74.34 | 74.54 |
| TraesCS1A01G440200.1 | Wheat | cytosol | 71.96 | 71.58 |
| TraesCS1B01G475400.3 | Wheat | golgi | 71.96 | 71.58 |
| TraesCS1D01G449200.3 | Wheat | cytosol | 71.69 | 71.32 |
| HORVU1Hr1G094800.2 | Barley | cytosol, endoplasmic reticulum, mitochondrion | 72.49 | 69.54 |
| KXG22879 | Sorghum | plastid | 74.6 | 68.45 |
| CDY26596 | Canola | cytosol | 99.47 | 61.24 |
| TraesCS1B01G291300.1 | Wheat | cytosol | 58.47 | 58.62 |
| TraesCS1D01G281400.1 | Wheat | cytosol | 58.2 | 58.36 |
| TraesCS1A01G282100.1 | Wheat | cytosol | 58.2 | 58.2 |
| CDY05652 | Canola | cytosol | 11.9 | 52.94 |
| TraesCS7A01G285700.1 | Wheat | cytosol | 18.25 | 47.59 |
| TraesCS5A01G063700.1 | Wheat | cytosol | 30.42 | 47.52 |
| Zm00001d012311_P001 | Maize | plastid | 14.81 | 27.86 |
Protein Annotations
| Gene3D:1.20.1460.10 | MapMan:24.1.1.2.3 | Gene3D:3.30.70.100 | Gene3D:3.30.70.1180 | GO:A0A078C4N6 | InterPro:ATPase_V1-cplx_csu |
| EnsemblPlants:CDX71966 | ProteinID:CDX71966 | ProteinID:CDX71966.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0016020 |
| GO:GO:0033180 | EnsemblPlantsGene:GSBRNA2T00155730001 | PFAM:PF03223 | PANTHER:PTHR10137 | PANTHER:PTHR10137:SF0 | SUPFAM:SSF118203 |
| UniParc:UPI0004EB2434 | InterPro:Vac_ATP_synth_c_sf | SEG:seg | : | : | : |
Description
BnaC08g29080D
Coordinates
chrLK031795:-:1545351..1548110
Molecular Weight (calculated)
42923.8 Da
IEP (calculated)
5.353
GRAVY (calculated)
-0.297
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRYWVVSL PVKDSSSTLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVENIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSSLV KPEDIVASEH LETLLAVVPK YSQKYWLACY
201: ETLTDFVVPR SSKKLFEDNE YALYTVTLFT RVADNFRTNA REKGFQVRDF EHSVEAQETR KQELEKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAGGAMAG LAGDSETHPY VSFTINLA
101: YLTRFVWDEA KYPTMSPLKE VVENIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSSLV KPEDIVASEH LETLLAVVPK YSQKYWLACY
201: ETLTDFVVPR SSKKLFEDNE YALYTVTLFT RVADNFRTNA REKGFQVRDF EHSVEAQETR KQELEKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAGGAMAG LAGDSETHPY VSFTINLA
001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
Arabidopsis Description
VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.