Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019792.1-P Field mustard cytosol 96.27 96.27
CDX98037 Canola cytosol 96.27 96.27
CDX71966 Canola cytosol 96.27 95.5
CDY21070 Canola cytosol 95.73 95.48
Bra016752.1-P Field mustard cytosol, mitochondrion, plastid 95.73 95.48
CDY66539 Canola cytosol 95.73 95.48
CDY19421 Canola cytosol 95.47 94.96
KRG94673 Soybean endoplasmic reticulum 83.2 82.76
VIT_14s0068g01280.t01 Wine grape mitochondrion 82.13 82.13
KRH08399 Soybean endoplasmic reticulum 81.07 81.07
KRH70055 Soybean endoplasmic reticulum 81.07 81.07
KRH06855 Soybean endoplasmic reticulum 81.87 79.95
Solyc03g097790.2.1 Tomato plastid 62.93 77.89
GSMUA_Achr4P08830_001 Banana mitochondrion, plastid 52.27 76.86
CDY16036 Canola cytosol 96.27 76.16
EES20054 Sorghum plastid 76.53 76.13
GSMUA_AchrUn_... Banana mitochondrion, plastid 52.27 75.97
Os05t0593100-01 Rice plasma membrane 76.27 75.86
Zm00001d039157_P001 Maize plastid 75.2 74.8
Zm00001d044665_P001 Maize plastid 74.93 74.54
TraesCS1A01G440200.1 Wheat cytosol 72.27 71.32
TraesCS1B01G475400.3 Wheat golgi 72.27 71.32
TraesCS1D01G449200.3 Wheat cytosol 72.0 71.05
HORVU1Hr1G094800.2 Barley cytosol, endoplasmic reticulum, mitochondrion 72.8 69.29
KXG22879 Sorghum plastid 75.2 68.45
Bra026951.1-P Field mustard cytosol 96.27 63.44
TraesCS1B01G291300.1 Wheat cytosol 59.47 59.15
TraesCS1D01G281400.1 Wheat cytosol 59.2 58.89
CDY26596 Canola cytosol 96.27 58.79
TraesCS1A01G282100.1 Wheat cytosol 59.2 58.73
TraesCS7A01G285700.1 Wheat cytosol 18.4 47.59
TraesCS5A01G063700.1 Wheat cytosol 30.67 47.52
Zm00001d012311_P001 Maize plastid 14.93 27.86
Protein Annotations
Gene3D:1.20.1460.10MapMan:24.1.1.2.3Gene3D:3.30.70.100Gene3D:3.30.70.1180EntrezGene:837840UniProt:A0A178WM16
ProteinID:AAF78489.1EMBL:AB493453ProteinID:AEE28936.1EMBL:AF208261EMBL:AF334725ArrayExpress:AT1G12840
EnsemblPlantsGene:AT1G12840RefSeq:AT1G12840TAIR:AT1G12840RefSeq:AT1G12840-TAIR-GEnsemblPlants:AT1G12840.1TAIR:AT1G12840.1
InterPro:ATPase_V1-cplx_csuEMBL:AY059872EMBL:AY093334UniProt:C0SUV0ncoils:CoilSymbol:DET3
GO:GO:0000221GO:GO:0000325GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773
GO:GO:0005774GO:GO:0005794GO:GO:0005886GO:GO:0006810GO:GO:0006811GO:GO:0008150
GO:GO:0008553GO:GO:0009507GO:GO:0009536GO:GO:0009653GO:GO:0009826GO:GO:0009987
GO:GO:0015078GO:GO:0015991GO:GO:0015992GO:GO:0016020GO:GO:0016043GO:GO:0016049
GO:GO:0016787GO:GO:0033180GO:GO:0040007RefSeq:NP_563916.1ProteinID:OAP19320.1PFAM:PF03223
PO:PO:0000005PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001170
PO:PO:0001185PO:PO:0004507PO:PO:0005052PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007131PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PANTHER:PTHR10137PANTHER:PTHR10137:SF0UniProt:Q9SDS7SUPFAM:SSF118203
UniParc:UPI0000000E4AInterPro:Vac_ATP_synth_c_sfSEG:seg:::
Description
VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
Coordinates
chr1:+:4374205..4378514
Molecular Weight (calculated)
42621.5 Da
IEP (calculated)
5.202
GRAVY (calculated)
-0.284
Length
375 amino acids
Sequence
(BLAST)
001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.