Factsheet for GSMUA_AchrUn_randomP05560_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
vacuole 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P07200_001
GSMUA_Achr5P05820_001
GSMUA_Achr5P05830_001
GSMUA_Achr8P23160_001
GSMUA_Achr9P15480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	GSMUA_Achr3P07200_001	AT1G77760.1	21798944
AT1G12840.1	GSMUA_Achr5P05820_001	AT1G77760.1	21798944
AT1G12840.1	GSMUA_Achr5P05830_001	AT1G77760.1	21798944
AT1G12840.1	GSMUA_Achr8P23160_001	AT1G77760.1	21798944
AT1G12840.1	GSMUA_Achr9P15480_001	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	90.31	91.37
Solyc03g097790.2.1	Tomato	plastid	72.48	61.72
VIT_14s0068g01280.t01	Wine grape	mitochondrion	77.91	53.6
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	77.52	53.33
AT1G12840.1	Thale cress	cytosol	75.97	52.27
KRG94673	Soybean	endoplasmic reticulum	76.36	52.25
Bra019792.1-P	Field mustard	cytosol	75.58	52.0
CDX98037	Canola	cytosol	75.58	52.0
CDY66539	Canola	cytosol	75.58	51.86
CDY21070	Canola	cytosol	75.58	51.86
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	75.19	51.6
CDX71966	Canola	cytosol	75.58	51.59
CDY19421	Canola	cytosol	75.19	51.46
KRH70055	Soybean	endoplasmic reticulum	74.03	50.93
KRH08399	Soybean	endoplasmic reticulum	73.64	50.67
KRH06855	Soybean	endoplasmic reticulum	74.81	50.26
CDY16036	Canola	cytosol	75.97	41.35
Bra026951.1-P	Field mustard	cytosol	75.97	34.45
CDY05652	Canola	cytosol	10.85	32.94
CDY26596	Canola	cytosol	75.97	31.92
GSMUA_AchrUn_...	Banana	cytosol	3.49	5.84
GSMUA_Achr4P08840_001	Banana	cytosol	0.78	1.49

Protein Annotations

MapMan:24.1.1.2.3	Gene3D:3.30.70.100	InterPro:ATPase_V1-cplx_csu	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0033180	EnsemblPlantsGene:GSMUA_AchrUn_randomG05560_001	EnsemblPlants:GSMUA_AchrUn_randomP05560_001	EnsemblPlants:GSMUA_AchrUn_randomT05560_001	UniProt:M0U6L8
PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	UniParc:UPI0002953297	InterPro:Vac_ATP_synth_c_sf
SEG:seg	:	:	:	:	:

Description

V-type proton ATPase subunit C [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05560_001]

Coordinates

chrchrUn_random:-:22772909..22777532

Molecular Weight (calculated)

29277.8 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.244

Length

258 amino acids

Sequence
(BLAST)

001: MAATLRYWIV SLPVHTSASA TWNRLRQSIS KNSFDTPLYR FTMPDLRVGT LDSLLALSDD LVKSNAFIEG VTHKIRRQIE ELEKASGVEV GALTVDGVPI
101: DSYLTRFVWD EGKYPTMSPL RELVDSIHVQ VAKIEDDMKV RVAEYSNIRS QLNAINRKQS GSLAVRDISN LVNPEDIVAS EHLVTLLAVV PKYSQKDWLS
201: SYETLTTFVV PRSTKKLHED NEYALYTVTL FQKVADNFRN NAREKGFQAS FFTQEDLL

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.