Factsheet for VIT_17s0000g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
vacuole 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01280.t01	Wine grape	mitochondrion	85.07	85.07
Solyc03g097790.2.1	Tomato	plastid	65.33	80.86
EES20054	Sorghum	plastid	80.0	79.58
Zm00001d039157_P001	Maize	plastid	80.0	79.58
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	53.87	79.22
Os05t0593100-01	Rice	plasma membrane	78.93	78.51
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	53.33	77.52
Zm00001d044665_P001	Maize	plastid	76.8	76.39
TraesCS1B01G475400.3	Wheat	golgi	76.27	75.26
TraesCS1A01G440200.1	Wheat	cytosol	76.0	75.0
TraesCS1D01G449200.3	Wheat	cytosol	75.73	74.74
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	75.47	71.83
KXG22879	Sorghum	plastid	77.07	70.15
TraesCS1B01G291300.1	Wheat	cytosol	62.67	62.33
TraesCS1A01G282100.1	Wheat	cytosol	62.4	61.9
TraesCS1D01G281400.1	Wheat	cytosol	62.13	61.8
TraesCS5A01G063700.1	Wheat	cytosol	32.0	49.59
TraesCS7A01G285700.1	Wheat	cytosol	17.6	45.52
Zm00001d012311_P001	Maize	plastid	16.0	29.85

Protein Annotations

Gene3D:1.20.1460.10	EntrezGene:100266332	wikigene:100266332	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180
InterPro:ATPase_V1-cplx_csu	ProteinID:CBI15738	ProteinID:CBI15738.3	UniProt:D7SH58	EMBL:FN594950	GO:GO:0000221
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008553
GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180
GO:GO:0046961	EntrezGene:LOC100266332	wikigene:LOC100266332	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0
SUPFAM:SSF118203	UniParc:UPI00015C9311	ArrayExpress:VIT_17s0000g00460	EnsemblPlantsGene:VIT_17s0000g00460	EnsemblPlants:VIT_17s0000g00460.t01	InterPro:Vac_ATP_synth_c_sf
unigene:Vvi.18683	RefSeq:XP_002284444	RefSeq:XP_002284444.1	SEG:seg	:	:

Description

V-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:D7SH58]

Coordinates

chr17:-:309467..318791

Molecular Weight (calculated)

42397.1 Da

IEP (calculated)

5.494

GRAVY (calculated)

-0.319

Length

375 amino acids

Sequence
(BLAST)

001: MATRYWVVSL PVPTSASSLW SRLQESISKH SFDTPLYRFN TPDLRVGTLD SLLSLSDDLL KSNSFVEGVT HKIRRQIEEL ERGSGGESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLRE IVDGIHVQVA KIEDDLKVRV AEYNNVRSQL NAINRKQTGS LAVRDLSNLV KPEDIITSEH LVTLLAVVPK YSQKDWLSTY
201: ETLATYVVPR SSKKLHEDNE YALYTVTIFG RVADNFKTSA RERGFQIRDF EYSPETQESR KQELEKLMLD QDTIRTSLLQ WCYTSYGEVF SSWMHFCAVR
301: VFAESILRYG LPPSFLSVVL APSVKSEKKA RSILEGLSDS ANSTYWKSED ELGGMGSLGG DADSHPYVSF TINLV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.